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Molecular Dynamics Simulations of Perovskites: The Effect of Potential Function Representation on Equilibrium Structural Properties
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作者 Kholmirzo T. Kholmurodov Sagille A. Ibragimova +3 位作者 Pavel P. Gladishev Anatoly V. Vannikov Alexey R. Tameev Tatyana Yu. Zelenyak 《Open Journal of Physical Chemistry》 2015年第4期110-121,共12页
The perovskites with general formula ABX3 have been widely used as for materials with their unique properties (ferroelectric, piezoelectric, dielectric, catalytic and so on). Hybrid organolead halide perovskites are a... The perovskites with general formula ABX3 have been widely used as for materials with their unique properties (ferroelectric, piezoelectric, dielectric, catalytic and so on). Hybrid organolead halide perovskites are a class of semiconductors with ABX3 (X = Cl, Br, and I) structures consisting of lead cations in 6-fold coordination (B site), surrounded by an octahedron of halide anions (X site, face centered) together with the organic components in 12-fold cub octahedral coordination. These hybrid perovskites have a direct band gap, a large absorption coefficient as well as high charge carrier mobility that represent a very attractive characteristic of cost-effective solar cells. Basically, these crystals are inorganic solids of CaTiO3 type held together by bonds that are either ionic or partially ionic and partially covalent. In spite of the partially covalent character of the Ti-O bond, the system is modeled by a two-body central force interatomic potential (the form of the Vashishta and Rahman interatomic potential), which has been used successfully for many materials with a perovskite structure. In the present work using molecular dynamics (MD) simulation method we investigate the dynamical and structural behavior of CaTiO3 perovskite at normal pressure and temperature conditions. The MD calculations were performed on a system of 16,000 particles (3200Ca + 3200Ti + 96,00O), initially in an orthorhombic-Pbnm structure. The orthorhombic MD box had edges Lx = 53.4 &Aring, Ly = 53.4 &Aring and Lz = 61.12 &Aring, which provided a density matching the experimental value of ρ = 4 g/cm3. Starting with this structure and using proposed interatomic potentials the MD system stabilizes at room temperature in its initial configuration. The aim of the present study to explore the effect of potential function representations on structural equilibrium properties for the perovskite models including hybrid halide ones outlined above. Concerning the perovskite equilibrium state we elucidate the role of potential function modification on the atomic pair correlation and structural re-organization. The details of the interatomic potential representation have to be crucially important for obtaining of correct analysis data in crystallic, liquid and amorphous phases including perovskite systems. 展开更多
关键词 Perovskites HALIDES Potential FUNCTIONS STRUCTURAL Properties MD Simulations
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Express Screening of Biological Objects Using Multisensor Stripping Voltamperometry with Pattern Recognition
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作者 I. I. Kolesnichenko L. M. Balachova E. P. Kantarzhi 《American Journal of Analytical Chemistry》 2016年第7期588-596,共9页
Express diagnostics of biological objects is necessary for operational preliminary assessment of the condition of the patient. A method of recognition of differences between the norm and pathology is based on analysis... Express diagnostics of biological objects is necessary for operational preliminary assessment of the condition of the patient. A method of recognition of differences between the norm and pathology is based on analysis of multidimensional patterns of the voltamperogram electrochemical test systems in Electronic formats “language”, “electronic nose”. The basis of such systems is the use of a set (matrix) sensor with completely different characteristics. A. N. Frumkin Institute of Physical Chemistry and Electrochemistry RAS (IPCE) developed a method for multidimensional stripping voltammetry, which allowed you to provide information on biological matter being investigated not as a number, as a response to a single dimension, and in the form of N-dimensional image. Formats are implemented in the process of electrochemical studies of liquid or gaseous phase. Evaluating the closeness of the resulting image object under test with known samples is collected in a database. Examples of express diagnostics of glaucoma are with accordance of the results of the electrochemical research of blood serum. 展开更多
关键词 Express Screening Biological Objects Multisensor Stripping Voltamperometry Glaucoma
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Anomalous Laterally Stressed Kinetically Trapped DNA Surface Conformations
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作者 Valery V.Prokhorov Nikolay A.Barinov +3 位作者 Kirill A.Prusakov Evgeniy V.Dubrovin Maxim D.Frank-Kamenetskii Dmitry V.Klinov 《Nano-Micro Letters》 SCIE EI CAS CSCD 2021年第8期263-280,共18页
Up to now,the DNA molecule adsorbed on a surface was believed to always preserve its native structure.This belief implies a negligible contribution of lateral surface forces during and after DNA adsorption although th... Up to now,the DNA molecule adsorbed on a surface was believed to always preserve its native structure.This belief implies a negligible contribution of lateral surface forces during and after DNA adsorption although their impact has never been elucidated.High-resolution atomic force microscopy was used to observe that stiff DNA molecules kinetically trapped on monomolecular films comprising one-dimensional periodically charged lamellar templates as a single layer or as a sublayer are oversaturated by sharp discontinuous kinks and can also be locally melted and supercoiled.We argue that kink/anti-kink pairs are induced by an overcritical lateral bending stress(>30 pNnm)inevitable for the highly anisotropic 1D-1D electrostatic interaction of DNA and underlying rows of positive surface charges.In addition,the unexpected kink-inducing mechanical instability in the shape of the template-directed DNA confined between the positively charged lamellar sides is observed indicating the strong impact of helicity.The previously reported anomalously low values of the persistence length of the surface-adsorbed DNA are explained by the impact of the surface-induced low-scale bending.The sites of the local melting and supercoiling are convincingly introduced as other lateral stress-induced structural DNA anomalies by establishing a link with DNA high-force mechanics.The results open up the study in the completely unexplored area of the principally anomalous kinetically trapped DNA surface conformations in which the DNA local mechanical response to the surface-induced spatially modulated lateral electrostatic stress is essentially nonlinear.The underlying rich and complex in-plane nonlinear physics acts at the nanoscale beyond the scope of applicability of the worm-like chain approximation. 展开更多
关键词 DNA surface conformations Kinetic trapping Lateral stress Periodically charged surface DNA kinks
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