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Effective Method to Resolve the Chromosome Numbers in Pistacia Species (Anacardiaceae)
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作者 Mohannad Al-Saghir Shadi Abu Baker Robert Pusok 《American Journal of Plant Sciences》 2014年第20期2913-2916,共4页
The genus Pistacia L. belongs to the Anacardiaceae family and includes at least eleven species. Cytogenetic studies addressing the genus Pistacia are rather few. Chromosome numbers of the different Pistacia species, r... The genus Pistacia L. belongs to the Anacardiaceae family and includes at least eleven species. Cytogenetic studies addressing the genus Pistacia are rather few. Chromosome numbers of the different Pistacia species, revealed by these studies, are questionable due to the fact that poor chromosome counting protocols were used, and these protocols are hampered by the extremely small-sized chromosomes of Pistacia species. The aim of this study was to develop a more effective method to resolve the chromosome numbers in Pistacia species using a fluorescent microscope. The method described here is modified from the Sigma Plant Protoplast Digest/Wash Solution protocol. The method used here is highly effective for karyotyping analysis and studying population genetics of Pistacia species. Moreover, it is easy and can be reproduced for other species that have smaller chromosomes. This method can be used for plant herbarium specimens or field plants. This study provides valuable chromosomal data for cytogeneticists and plant breeders who are working on this genus. It provides additional insight into understanding the taxonomic and phylogenetic relationships among Pistacia species. The chromosomes described here are also suitable for gene and genome mapping. 展开更多
关键词 PISTACIA CYTOGENETICS chromosome numbers Fluorescent Microscopy
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模拟紫外辐射对菹草表型特征的影响
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作者 王锦旗 宋玉芝 《核农学报》 北大核心 2025年第4期669-677,共9页
为评估强光照中光合有效辐射(PAR)、紫外线-A(UV-A,320~400 nm)和紫外线-B(UV-B,280~320 nm)辐射对菹草生长的影响,利用人工诱导光源将菹草植株暴露于4种不同的辐射条件下,分别为PAR处理组、PAR+UV-A辐射处理组、PAR+UV-B辐射处理组、PA... 为评估强光照中光合有效辐射(PAR)、紫外线-A(UV-A,320~400 nm)和紫外线-B(UV-B,280~320 nm)辐射对菹草生长的影响,利用人工诱导光源将菹草植株暴露于4种不同的辐射条件下,分别为PAR处理组、PAR+UV-A辐射处理组、PAR+UV-B辐射处理组、PAR+UV-A辐射+UV-B辐射处理组,观测植株形态、克隆分枝数及生物量变化。结果表明,在暴露28 d后,相较于PAR,菹草株高、节间距、叶面积、叶片数、生物量等指标在UV-B作用下显著下降,在UV-A辐射作用下略有下降,在两者联合作用下,上述指标极显著降低,但两者协同作用较弱。在UV-A辐射作用下,植株出现少量分枝;在UV-B辐射作用下,植株出现较多分枝;在两者联合作用下,产生的分枝数最多;仅PAR作用下,植株不产生分枝。随辐射时间延长,植株各项指标的总变异系数及表型可塑性指数均逐渐增大。因此,紫外线在促进菹草分枝及表型改变方面起重要作用。本研究结果为了解菹草在春末夏季大批衰亡的原因提供了理论依据。 展开更多
关键词 表型可塑性 分枝数 株高 叶面积 觅食行为
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中国高粱株高和节间数全基因组关联分析及候选基因预测
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作者 徐建霞 丁延庆 +4 位作者 曹宁 程斌 高旭 李文贞 张立异 《作物学报》 北大核心 2025年第3期568-585,I0677-I0687,共29页
适当降低株高可以提高植物的养分利用效率和抗倒伏性,对高粱的高产和稳产具有重要意义。为揭示高粱株高遗传机制,本研究以242份中国高粱为研究对象,利用2,015,850个单核苷酸多态性(SNP)标记,在7个不同环境条件下对株高、节间数及节间长... 适当降低株高可以提高植物的养分利用效率和抗倒伏性,对高粱的高产和稳产具有重要意义。为揭示高粱株高遗传机制,本研究以242份中国高粱为研究对象,利用2,015,850个单核苷酸多态性(SNP)标记,在7个不同环境条件下对株高、节间数及节间长度进行全基因组关联分析(Genome-wide association study,GWAS)。表型调查表明,株高、节间数和节间长度的表型变异系数在13.47%~30.06%之间,在所有环境下的偏度和峰度的绝对值均小于1。利用2种不同的关联模型(Blink和FarmCPU)对株高、节间数及节间长度进行GWAS分析,在10条染色体上共鉴定出118个与这3个性状显著相关的数量性状核苷酸(QTN)。其中,与株高、节间数及节间长度显著相关的QTN分别为60个、37个和32个,株高与节间数、节间长度共定位QTN分别有8个和3个。通过对候选基因的序列分析和功能注释,在12个QTN置信区间或附近鉴定出14个候选基因,它们与水稻和玉米中参与糖代谢、激素合成与信号传递以及细胞分裂的基因同源。选择性消除分析揭示,位于1号染色体的候选基因Sobic.001G510400在中国南北高粱群体中受到强烈选择,形成了以北方矮秆高粱为主的单倍型Hap1和以南方高秆高粱为主的单倍型Hap2。携有Hap1的北方种质871255和携有Hap2的南方种质红缨子之间,该基因表达存在显著差异。本研究结果为中国高粱品种株高遗传改良提供了理论依据。 展开更多
关键词 高粱 株高 节间数 全基因组关联分析(GWAS) 候选基因
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西藏11种菊科药用植物染色体核型研究
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作者 贺文琪 柴国柱 +2 位作者 薛矗 山晓丹 兰小中 《种子》 北大核心 2025年第2期190-201,共12页
为探究西藏菊科药用植物染色体核型的特点,使用植物传统压片法对西藏11种菊科药用植物进行了染色体核型研究,其中9种为首次报道。核型公式及不对称性:小舌紫菀:2 n=2 x=18=10 m+6 sm+2 sm(sat),2A;萎软紫菀:2 n=2 x=18=16 m+2 sm,1A;丝... 为探究西藏菊科药用植物染色体核型的特点,使用植物传统压片法对西藏11种菊科药用植物进行了染色体核型研究,其中9种为首次报道。核型公式及不对称性:小舌紫菀:2 n=2 x=18=10 m+6 sm+2 sm(sat),2A;萎软紫菀:2 n=2 x=18=16 m+2 sm,1A;丝苞菊:2 n=2 x=36=32 m+4 sm,1A;川滇风毛菊:2 n=2 x=34=24 m+10 sm,2B;莱菔叶千里光:2 n=2 x=40=38 m+2 sm,1A;节花千里光:2 n=2 x=40=38 m+2 sm,2B;川西合耳菊:2 n=2 x=40=38 m+2 sm,2A;沼生橐吾:2 n=2 x=58=34 m+24 sm,2A;千花橐吾:2 n=2 x=58=42 m+16 sm,2B;反苞蒲公英:2 n=2 x=24=14 m+10 sm,2A;滇苦菜:2 n=2 x=10=2 m+6 sm+2 mt,2A。通过对这11种菊科药用植物进行核型进化趋势分析和聚类分析,结果表明,染色体进化程度依次为:滇苦菜>小舌紫菀>沼生橐吾>千花橐吾>反苞蒲公英>川滇风毛菊>莱菔叶千里光>萎软紫菀>丝苞菊>节花千里光>川西合耳菊,川西合耳菊和节花千里光从染色体水平上看亲缘关系较为接近。 展开更多
关键词 菊科 药用植物 染色体 核型分析
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60份广西茶树种质资源的染色体倍性鉴定
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作者 黄寿辉 彭靖茹 +6 位作者 温立香 张芬 陈家献 袁冬寅 欧淑琼 张栩浩 赵媛 《安徽农业科学》 2025年第5期10-13,17,共5页
基于流式细胞仪对植物染色体倍性鉴定的高效性和准确性,利用流式细胞仪分2批次对60份广西茶树种质资源的染色体倍性进行鉴定分析,以期得到种质资源准确的染色体倍性信息,为茶树育种提供科学依据。共鉴定出茶树二倍体53份,三倍体6份,单倍... 基于流式细胞仪对植物染色体倍性鉴定的高效性和准确性,利用流式细胞仪分2批次对60份广西茶树种质资源的染色体倍性进行鉴定分析,以期得到种质资源准确的染色体倍性信息,为茶树育种提供科学依据。共鉴定出茶树二倍体53份,三倍体6份,单倍体1份,未检测到四倍体。而检测到的单倍体茶树180(龙脊古树2号)在后续的茶树染色体加倍获得多倍体育种提供原始材料,为茶树的多倍体育种和运用研究提供参考。 展开更多
关键词 茶树 种质资源 染色体倍性 流式细胞术 鉴定
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应用CNV-seq检测孕早期流产绒毛的染色体嵌合体
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作者 许育双 刘思平 +2 位作者 贾蓓 靳旺杰 华芮 《现代妇产科进展》 2025年第1期33-37,共5页
目的:应用基因组拷贝数变异分析(CNV-seq)技术,通过多位点取样,探究早孕期胚胎停育绒毛样本嵌合体的发生率,为临床遗传咨询提供依据。方法:选取2019年8月到2024年6月送检南方医院妇产科产前诊断中心的孕早期流产绒毛样本,对其进行多位... 目的:应用基因组拷贝数变异分析(CNV-seq)技术,通过多位点取样,探究早孕期胚胎停育绒毛样本嵌合体的发生率,为临床遗传咨询提供依据。方法:选取2019年8月到2024年6月送检南方医院妇产科产前诊断中心的孕早期流产绒毛样本,对其进行多位点取样后混合DNA提取,行基因组CNV-seq检测,同时行短串联重复序列(STR)排除母体细胞污染和确认是否为染色体多倍体。结果:1141例流产绒毛样本中,CNV-seq检测共检出染色体异常样本762例,其中嵌合体79例,嵌合体检出率为6.92%。孕妇年龄小于30岁、30~34岁、35~39岁、40岁及以上4个年龄组中染色体嵌合体的检出率分别为7.58%、6.57%、6.48%、6.49%,不同年龄阶段的嵌合体检出率差异无统计学意义(P=0.93)。将孕周分为6~7+6周、8~9+6周、10~11+6周组,3组的嵌合体检出率分别为8.17%、5.05%、7.08%,早孕期不同孕周的嵌合体检出率差异无统计学意义(P=0.15)。结论:CNV-seq技术对染色体嵌合体的诊断价值较高,多位点取样的CNV-seq技术能有效提高嵌合体的检出率。嵌合体的检出率与孕妇年龄和早孕期孕周无关。 展开更多
关键词 基因组拷贝数变异分析 嵌合体 自然流产 多位点取样
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1例18号环状染色体患儿遗传学分析及文献复习
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作者 黄冰怡 赵芹 +2 位作者 庾冬兰 王曼伊 朱春江 《检验医学》 2025年第2期135-141,共7页
目的对1例智力低下、生长发育迟缓的患儿进行遗传学检查,分析其临床表型与遗传学特征的关系。方法收集1例智力低下、生长发育迟缓患儿的临床资料,并进行外周血G显带染色体核型分析和基因组拷贝数变异测序(CNV-seq)。以“18号环状染色体... 目的对1例智力低下、生长发育迟缓的患儿进行遗传学检查,分析其临床表型与遗传学特征的关系。方法收集1例智力低下、生长发育迟缓患儿的临床资料,并进行外周血G显带染色体核型分析和基因组拷贝数变异测序(CNV-seq)。以“18号环状染色体”和“ring chromosome 18”为关键词,对中国知网、万方数据知识服务平台和PubMed数据库1998年1月—2024年10月收录的文献进行检索。总结18号环状染色体患者的临床表现和染色体核型分析结果。结果患儿具有特殊面容,染色体核型分析结果为46,XY,r(18)(p11.21q23),CNV-seq检测结果为seq[hg19]del(18)(p11.32p11.21)chr18:g.120000_14980000del,提示18p11.32p11.21区域存在14.86 Mb的片段缺失,被确诊为18号环状染色体。患儿父母染色体核型均无异常。共检索到16篇关于18号环状染色体的文献,涉及16例患者。文献复习结果显示,17例患者中,特殊面容占100.00%(17/17),智力低下占93.75%(15/16,1例产前诊断的胎儿除外),语言和行为落后占64.71%(11/17),身材矮小占52.94%(9/17),神经发育异常占41.18%(7/17),小头畸形占17.65%(3/17),心脏异常占23.53%(4/17),内分泌和免疫系统异常占17.65%(3/17),肌张力低下占17.65%(3/17),眼部异常占17.65%(3/17),癫痫占11.76%(2/17),性腺发育异常占11.76%(2/17),皮肤病变占5.88%(1/17)。结论18号环状染色体患者主要临床表现为生长发育迟缓、智力低下、特殊面容、神经发育异常和心脏结构畸形,其临床表型与染色体缺失部位、缺失的片段大小有关。 展开更多
关键词 18号环状染色体 染色体核型分析 拷贝数变异测序
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染色体拷贝数变异筛查在产前孕妇中的临床运用
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作者 冯拓宇 徐文瑜 +2 位作者 谭放 周小静 黄月娇 《齐齐哈尔医学院学报》 2025年第4期349-353,共5页
目的 研究产前孕妇检查中染色体拷贝数变异(Copy Number Variation, CNV)筛查的临床意义。方法 将2023年1—12月在本院产前诊断中心行羊膜腔穿刺的669例羊水样本同时进行低深度全基因组测序(Copy Number Variation Sequencing, CNV-seq... 目的 研究产前孕妇检查中染色体拷贝数变异(Copy Number Variation, CNV)筛查的临床意义。方法 将2023年1—12月在本院产前诊断中心行羊膜腔穿刺的669例羊水样本同时进行低深度全基因组测序(Copy Number Variation Sequencing, CNV-seq)和染色体核型分析。结果 送检的669例羊水样本中CNV-seq检测出21三体47例,18三体13例,13三体3例,性染色体非整倍体异常18例,这些结果与显带染色体核型分析结果一致;性染色体结构异常4例;嵌合体核型6例;致病或疑似致病CNVs 18例;临床意义未明的染色体微缺失、微重复37例,其中2例经遗传咨询终止妊娠;CNV-seq检测染色体异常检出率为16.29%(109/669),CNV-seq与核型分析两者联合检测共检出135例致病性异常,异常检出率为20.18%(135/669),比使用单一的染色体G显带核型分析高出3.44%。结论 CNV-seq在高风险孕妇产前诊断中有良好的应用价值,与核型分析相结合,有助于提高遗传性疾病的诊断,提高产前诊断水平。 展开更多
关键词 基因组拷贝数变异测序 染色体核型分析 产前诊断 染色体异常
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Correlation between the Change in the Number of Apis mellifera Worker Bees and Nectar Secretion of Nectariferous Plants
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作者 余玉生 张祖芸 +2 位作者 宋文菲 卢焕仙 王艳辉 《Agricultural Science & Technology》 CAS 2014年第1期116-118,136,共4页
[Objective] This study aimed to clarify the correlation between changes of Apis mel ifera and the nectar secretion characteristics of nectariferous plants. [Method] Considering the nectar secretion characteristics of ... [Objective] This study aimed to clarify the correlation between changes of Apis mel ifera and the nectar secretion characteristics of nectariferous plants. [Method] Considering the nectar secretion characteristics of major and auxiliary nec-tariferous plants, six Apis mel ifera colonies were selected for measure the number of eggs, larvae, pupae and adult bees from Jan. to Dec. in 2012; based on that, their annual change curves were also plotted. [Result] The results showed that there were three peaks of the total number of A. mel ifera workers throughout the year:the first occurred on May 15th, with bees developed into an ideal population for col-lecting pomegranate nectar, and the second and third peaks occurred on July 15th and Oct. 15th, respectively, with bees developed into an ideal population for col ect-ing E. ciliate (Thuab) Hyland. [Conclusion] Prevention of Varroa jacobsoni should be carried out with two or more types of acaricides at the late nectar flow stages of the two nectariferous plants(pomegranate and E. ciliate (Thuab) Hyland) when there was a nectar deficiency. Prevention of Tropilaelaps clareae should be timely per-formed with sublimed sulfur in conjunction with acaricides. This study provides a theoretical basis for the high-quality and high-yielding production of honey, as wel as for the product safety. 展开更多
关键词 Apis mellifera Number of worker bees Nectariferous plants CURVE Theoretical basis
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染色体微阵列分析技术对1例携带额外小标记染色体患儿的遗传学分析
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作者 章霞 尹燕军 +1 位作者 付志璇 柯江维 《检验医学》 2025年第2期131-134,共4页
目的通过分析1例智力低下、发育迟缓患儿额外小标记染色体(sSMC)的来源,探讨其发生机制,为临床遗传咨询提供依据。方法采用常规G显带技术对患儿及其父母的外周血进行染色体核型分析,采用染色体微阵列分析(CMA)技术对患儿进行全基因组拷... 目的通过分析1例智力低下、发育迟缓患儿额外小标记染色体(sSMC)的来源,探讨其发生机制,为临床遗传咨询提供依据。方法采用常规G显带技术对患儿及其父母的外周血进行染色体核型分析,采用染色体微阵列分析(CMA)技术对患儿进行全基因组拷贝数变异(CNV)分析,以明确患儿sSMC的来源、区域和片段大小。结果患儿染色体核型分析结果为47,XX,+mar,其父母染色体核型分析结果未见异常。CMA检测结果显示,患儿在chr15q11.2q13.3区域发生9.7 Mb片段的重复(拷贝数为4),为临床致病性CNV。该区段与dup(15)综合征相关。结论由于sSMC的来源多样性,需在传统染色体核型分析的基础上结合CMA确定其来源、区域和片段大小,为患儿的诊断、治疗和临床遗传咨询提供依据。 展开更多
关键词 额外小标记染色体 常规G显带技术 染色体微阵列分析技术 全基因组拷贝数变异
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7个中国菊科植物名称原白中采集号错误之更正
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作者 林云 毕海燕 《植物研究》 北大核心 2025年第1期148-154,共7页
根据《国际藻类、菌物和植物命名法规》(深圳法规,2018)规则9.2的要求,对7个中国菊科(Asteraceae)植物名称原白中采集号错误做了更正,这些名称是宽叶亚菊(Ajania latifolia C.Shih)、观光蓟(Cirsium tsoongianum Y.Ling)、甘肃多榔菊(Do... 根据《国际藻类、菌物和植物命名法规》(深圳法规,2018)规则9.2的要求,对7个中国菊科(Asteraceae)植物名称原白中采集号错误做了更正,这些名称是宽叶亚菊(Ajania latifolia C.Shih)、观光蓟(Cirsium tsoongianum Y.Ling)、甘肃多榔菊(Doronicum gansuense Y.L.Chen)、太白山飞蓬(Erigeron taipeiensis Y.Ling&Y.L.Chen)、无舌狗娃花(Heteropappus eligulatus Y.Ling ex Y.L.Chen&al.)、小花火绒草(Leontopodium micranthum Y.Ling)和白毛风毛菊(Saussurea lanata Y.L.Chen&S.Y.Liang),这些名称的主模式标本均收藏在中国科学院植物研究所国家植物标本馆(PE)。 展开更多
关键词 菊科 中国植物 采集号错误 原白
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染色体微阵列分析技术在孕妇羊水检测中的临床应用分析
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作者 赵龙 《中华养生保健》 2025年第1期63-65,69,共4页
目的 探讨与分染色体微阵列分析(Chromosomal Microarray Analysis,CMA)技术在孕妇羊水检测中的临床应用价值。方法 选取2023年1月—9月在伊犁哈萨克自治州妇幼保健院进行羊膜腔穿刺术的孕妇180例作为研究对象,抽取所有孕妇的羊水,分别... 目的 探讨与分染色体微阵列分析(Chromosomal Microarray Analysis,CMA)技术在孕妇羊水检测中的临床应用价值。方法 选取2023年1月—9月在伊犁哈萨克自治州妇幼保健院进行羊膜腔穿刺术的孕妇180例作为研究对象,抽取所有孕妇的羊水,分别进行核型分析与染色体微阵列分析,记录检测结果与随访妊娠结局。结果 在180例孕妇中,核型分析判断为染色体异常13例,占比7.22%;染色体微阵列分析判断为染色体异常25例,占比13.89%,染色体微阵列分析对于染色体异常的检出率显著高于核型分析(P<0.05)。在180例孕妇中,染色体微阵列分析检出拷贝数变异21例,占比11.67%,其中致病性CNV 13例、临床意义不明确的CNV 7例,可能致病性CNV 1例。正常活产45例,结局异常135例(引产31例、胎死宫内9例、早产95例)。染色体微阵列分析显示正常活产的染色体异常与拷贝数异常率分别为4.44%、2.22%,都显著低于结局异常的17.04%、14.81%(P<0.05)。结论 染色体微阵列分析技术在孕妇羊水检测中的临床应用可提高染色体异常的检出率,可检出拷贝数变异情况,从而指导分析妊娠结局。 展开更多
关键词 染色体微阵列分析技术 孕妇 羊水 染色体异常 拷贝数变异 妊娠结局
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386例颈项透明层增厚胎儿的染色体核型及拷贝数变异结果分析
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作者 唐艳 卢守莲 +2 位作者 宋胜楠 王珏 苗明珠 《临床检验杂志》 2025年第2期98-101,共4页
目的探讨颈项透明层(NT)增厚胎儿的染色体异常类型及其相关性,为产前遗传咨询提供依据。方法回顾性分析2018年1月至2022年4月因NT≥2.5mm而于南京医科大学第一附属医院接受侵入性产前诊断的386例单胎妊娠孕妇的临床资料。根据NT厚度(2.5... 目的探讨颈项透明层(NT)增厚胎儿的染色体异常类型及其相关性,为产前遗传咨询提供依据。方法回顾性分析2018年1月至2022年4月因NT≥2.5mm而于南京医科大学第一附属医院接受侵入性产前诊断的386例单胎妊娠孕妇的临床资料。根据NT厚度(2.5~3.4、3.5~3.9、4.0~4.9、5.0~5.9、≥6.0mm)、胎儿超声异常情况(单纯NT增厚、非单纯NT增厚)及孕妇年龄(高龄≥35岁、非高龄<35岁)进行分组,采用卡方检验比较不同组间胎儿染色体异常发生率的差异。结果386例NT增厚胎儿中,染色体异常检出87例,总检出率为22.5%(87/386),其中染色体数目异常占82.8%(72/87),拷贝数变异(CNV)异常占17.2%(15/87)。随NT厚度增加,胎儿染色体异常率及染色体数目异常率呈上升趋势(P<0.05),而CNV异常率差异无统计学意义(P=0.41)。非单纯NT增厚组胎儿染色体异常率(36.5%)及CNV异常率(14.1%)均明显高于单纯NT增厚组(18.6%和1.0%,P均<0.05)。高龄孕妇NT增厚胎儿染色体异常率(34.7%)及染色体数目异常率(31.6%)均显著高于非高龄孕妇(18.4%和14.2%,P均<0.05),但两组CNV异常率差异无统计学意义(P=0.62)。结论NT增厚胎儿染色体异常检出率随NT厚度增加而上升,高龄及合并其他超声异常是胎儿染色体异常的高危因素。CNV异常风险可能与NT厚度及孕妇年龄无明显相关性,但与是否合并其他超声异常相关。 展开更多
关键词 颈项透明层增厚 产前诊断 染色体异常 拷贝数变异测序
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Determination of rice panicle numbers during heading by multi-angle imaging 被引量:20
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作者 Lingfeng Duan Chenglong Huang +3 位作者 Guoxing Chen Lizhong Xiong Qian Liu Wanneng Yang 《The Crop Journal》 SCIE CAS CSCD 2015年第3期211-219,共9页
Plant phenomics has the potential to accelerate progress in understanding gene functions and environmental responses. Progress has been made in automating high-throughput plant phenotyping. However, few studies have i... Plant phenomics has the potential to accelerate progress in understanding gene functions and environmental responses. Progress has been made in automating high-throughput plant phenotyping. However, few studies have investigated automated rice panicle counting. This paper describes a novel method for automatically and nonintrusively determining rice panicle numbers during the full heading stage by analyzing color images of rice plants taken from multiple angles. Pot-grown rice plants were transferred via an industrial conveyer to an imaging chamber. Color images from different angles were automatically acquired as a turntable rotated the plant. The images were then analyzed and the panicle number of each plant was determined. The image analysis pipeline consisted of extracting the i2 plane from the original color image, segmenting the image, discriminating the panicles from the rest of the plant using an artificial neural network, and calculating the panicle number in the current image. The panicle number of the plant was taken as the maximum of the panicle numbers extracted from all 12 multi-angle images. A total of 105 rice plants during the full heading stage were examined to test the performance of the method. The mean absolute error of the manual and automatic count was 0.5, with 95.3% of the plants yielding absolute errors within ± 1. The method will be useful for evaluating rice panicles and will serve as an important supplementary method for high-throughput rice phenotyping. 展开更多
关键词 Plant PHENOTYPING RICE PANICLE NUMBER Multi-angle IMAGING Image analysis
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Identification of QTL for kernel number-related traits in a rice chromosome segment substitution line and fine mapping of qSP1 被引量:3
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作者 Fuying Ma Xiaoyan Zhu +8 位作者 Hui Wang Shiming Wang Guoqing Cui Ting Zhang Zhenglin Yang Guanghua He Yinghua Ling Nan Wang Fangming Zhao 《The Crop Journal》 SCIE CAS CSCD 2019年第4期494-503,共10页
A chromosome segment substitution line (CSSL) is a powerful tool for combining quantitative trait locus (QTL) mapping with the pyramiding of desirable alleles. The rice CSSL Z1364 with increased kernel number was iden... A chromosome segment substitution line (CSSL) is a powerful tool for combining quantitative trait locus (QTL) mapping with the pyramiding of desirable alleles. The rice CSSL Z1364 with increased kernel number was identified in a BC3F8 population derived from a cross of Nipponbare as the recipient with Xihui 18 as the donor parent. Z1364 carried three substitution segments distributed on chromosomes 1, 6, and 8. The mean substitution length was 1.19 Mb. Of 17 QTL identified on the substitution segments, qSP1 for spikelets per panicle, qSSD1 for seed-set density, and qNSB1 for number of secondary branches explained respectively 57.34%, 87.7%, and 49.44% of the corresponding phenotypic variance and were all linked to RM6777. Chi-square analysis showed that the increased kernel number in Z1364 was inherited recessively by a single gene. By fine mapping, qSP1 was delimited to a 50-kb region on the short arm of chromosome 1. Based on DNA sequence, a previously uncharacterized rice homolog of Arabidopsis thaliana AT4G32551 was identified as a candidate gene for qSP1 in which mutation increases the number of spikelets and kernels in Z1364. qSP1 was expressed in all tissues, but particularly in 1-cm panicles. The expression levels of OsMADS22, GN1A, and DST were upregulated and those of LAX2, GNP1, and GHD7 were downregulated in Nipponbare. These results provide a foundation for functional research on qSP1. 展开更多
关键词 RICE chromosome SEGMENT substitution line Increased number of KERNELS qSP1 QTL mapping for yield traits
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Characterization of chromosome segment substitution lines reveals candidate genes associated with the nodule number in soybean 被引量:1
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作者 ZOU Jia-nan ZHANG Zhan-guo +17 位作者 KANG Qing-lin YU Si-yang WANG Jie-qi CHEN Lin LIU Yan-ru MA Chao ZHU Rong-sheng ZHU Yong-xu DONG Xiao-hui JIANG Hong-wei WU Xiao-xia WANG Nan-nan HU Zhen-bang QI Zhao-ming LIU Chun-yan CHEN Qing-shan XIN Da-wei WANG Jin-hui 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2022年第8期2197-2210,共14页
Soybean is one of the most important food crops worldwide.Like other legumes,soybean can form symbiotic relationships with Rhizobium species.Nitrogen fixation of soybean via its symbiosis with Rhizobium is pivotal for... Soybean is one of the most important food crops worldwide.Like other legumes,soybean can form symbiotic relationships with Rhizobium species.Nitrogen fixation of soybean via its symbiosis with Rhizobium is pivotal for sustainable agriculture.Type Ⅲ effectors(T3Es)are essential regulators of the establishment of the symbiosis,and nodule number is a feature of nitrogen-affected nodulation.However,genes encoding T3Es at quantitative trait loci(QTLs)related to nodulation have rarely been identified.Chromosome segment substitution lines(CSSLs)have a common genetic background but only a few loci with heterogeneous genetic information;thus,they are suitable materials for identifying candidate genes at a target locus.In this study,a CSSL population was used to identify the QTLs related to nodule number in soybean.Single nucleotide polymorphism(SNP)markers and candidate genes within the QTLs interval were detected,and it was determined which genes showed differential expression between isolines.Four candidate genes(GmCDPK28,GmNAC1,GmbHLH,and GmERF5)linked to the SNPs were identified as being related to nodule traits and pivotal processes and pathways involved in symbiosis establishment.A candidate gene(GmERF5)encoding a transcription factor that may interact directly with the T3E NopAA was identified.The confirmed CSSLs with important segments and candidate genes identified in this study are valuable resources for further studies on the genetic network and T3Es involved in the signaling pathway that is essential for symbiosis establishment. 展开更多
关键词 SOYBEAN TypeⅢeffectors nodule number chromosome segment substitution lines
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Variation in chromosome number in the seedling progeny of a somaclone of Paspalum dilatatum
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作者 ZHU JM LJ DAVIES +1 位作者 D COHEN RE ROWLAND(Horticulture & Food Research Institute of New Zealand, Private Bag 11030, Palmerston North, New Zealand.)(Department of Botany, Massey University, Palmerston North, New Zealand.) 《Cell Research》 SCIE CAS CSCD 1994年第1期65-68,共4页
The somaclone, C39, derived by tissue culture from the obligate apomict Paspalum dilatatum cv Raki (2n=50), had 50 chromosomes and a karyotype apparently identical to Raki.SC2 seedlings of C39 showed a high degree of ... The somaclone, C39, derived by tissue culture from the obligate apomict Paspalum dilatatum cv Raki (2n=50), had 50 chromosomes and a karyotype apparently identical to Raki.SC2 seedlings of C39 showed a high degree of phenotypic variation which was of ten associated with increased chromosome numbers, but some of the variant seedlings were karyotypically indistinguishable from Raki or C39. Plants with increased chromosome numbers exhibited a high degree of intraplant chromosome variation (aneusomaty). In one of the SC2seedlings, the chromosome number of root tip cells varied from 58 to 82 and in several other seedlings the range was more than 10. The results suggested that the ability to form seed apomictically was much reduced in C39 and that this plant showed some capacity for sexual reproduction and the resulting seedlings, with a chromosome number of about 70, were genetically unstable. Of 11 SC2 seedlings examined cytolog ically, 6 did not produce any viable seed. Seedlings grown from seed of the remaining 5 plants showed that aneusomaty persisted in the SC3 generation. SC3 seedlings which were phenotypically similar to their maternal parent showed a similar range of chromosome numbers to that parent. Some of the SC3 seedlings exhibited an even wider range of chromosome numbers (e.g.56-136), and these plants were all dwarfs. 展开更多
关键词 PASPALUM somaclone chromosome number APOMIXIS sexual reproduction
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The “3 Genomic Numbers” Discovery: How Our Genome Single-Stranded DNA Sequence Is “Self-Designed” as a Numerical Whole
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作者 Jean-Claude Perez 《Applied Mathematics》 2013年第10期37-53,共17页
This article proves the existence of a hyper-precise global numerical meta-architecture unifying, structuring, binding and controlling the billion triplet codons constituting the sequence of single-stranded DNA of the... This article proves the existence of a hyper-precise global numerical meta-architecture unifying, structuring, binding and controlling the billion triplet codons constituting the sequence of single-stranded DNA of the entire human genome. Beyond the evolution and erratic mutations like transposons within the genome, it’s as if the memory of a fossil genome with multiple symmetries persists. This recalls the “intermingling” of information characterizing the fractal universe of chaos theory. The result leads to a balanced and perfect tuning between the masses of the two strands of the huge DNA molecule that constitute our genome. We show here how codon populations forming the single-stranded DNA sequences can constitute a critical approach to the understanding of junk DNA function. Then, we suggest revisiting certain methods published in our 2009 book “Codex Biogenesis”. In fact, we demonstrate here how the universal genetic code table is a powerful analytical filter to characterize single-stranded DNA sequences constituting chromosomes and genomes. We can then show that any genomic DNA sequence is featured by three numbers, which characterize it and its 64 codon populations with correlations greater than 99%. The number “1” is common to all sequences, expressing the second law of Chargaff. The other 2 numbers are related to each specific DNA sequence case characterizing life species. For example, the entire human genome is characterized by three remarkable numbers 1, 2, and Phi = 1.618 the golden ratio. Associated with each of these three numbers, we can match three axes of symmetry, then “imagine” a kind of hyperspace formed by these codon populations. Then we revisit the value (3-Phi)/2 which is probably universal and common to both the scale of quarks and atomic levels, balancing and tuning the whole human genome codon population. Finally, we demonstrate a new kind of duality between “form and substance” overlapping the whole human genome: we will show that—simultaneously with the duality between genes and junk DNA—there is a second layer of embedded hidden structure overlapping all the DNA of the whole human genome, dividing it into a second type of duality information/redundancy involving golden ratio proportions. 展开更多
关键词 Genetic Code CODON Populations Junk DNA Cancer Genomics Chromosomal Translocations Genomes Diversity chromosomes Diversity WHOLE Human GENOME DNA SEQUENCE “Phi” the Golden Ratio Fibonacci numbers Information Theory SYMMETRY Cellular Automata Chargaff’s CODON Level SYMMETRY Principle Fractal Self-Similarity “e” Euler’s Number “Pi” form and Substance Redundancy Encryption
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The Effect of Biological and Cytotoxic Therapy for Rheumatoid Arthritis on Human Chromosomes
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作者 Sekib Sokolovic Sida Kasumagic +1 位作者 Mirela Mackic-Curovic Izeta Aganovic-Musinovic 《Journal of Life Sciences》 2010年第7期30-32,共3页
Objectives: An open-label prospective, combined basic and clinical controlled study was done to investigate the effects of biological therapy using rituximab, and cytotoxic drug treatment with methotrexate on morphol... Objectives: An open-label prospective, combined basic and clinical controlled study was done to investigate the effects of biological therapy using rituximab, and cytotoxic drug treatment with methotrexate on morphology and quantifitiation of chromosomes in rheumatoid arthritis patients. Methods: This study is follow-up of a prior publication, with new observations in comparison with control subjects. A total of 16 subjects were divided into two groups. Group I comprised 8 seropositive rheumatoid arthritis patients who were analysed for the primary end point of possible cytotoxic effects of rituximab and methotrexate. Group II included 8 healthy individuals who served as controls. Assessment was done before treatment with rituximab, and 4 weeks after initiation of therapy. Patients were randomly assigned to receive infusion of rituximab in a full dose of 2.0 g divided into two doses of 1.0 g on days I and 15. The lymphocytes from periphereal blood was cultured by the Moorhead method. Results: Normal male and female Karyograms were observed after full courses of therapy with rituximab. In one female patient who had been receiving longstanding cytotoxic therapy with methotrexate, 2% of chromosomal mitosis showed structural abnormalities. Following the discontinuation of methotrexate and the administration of rituximab, her karyogram became normal. Conclusion: The results from this study indicated that rituximab therapy was safe for the number and structure of human chromosomes, while methotrexate showed chromosomal aberration in one female RA patient. After discontinuation of this longstanding treatment, the karyogram of the same patient returned to normal. 展开更多
关键词 RITUXIMAB chromosome rheumatoid arthritis structure and number.
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胎儿末端染色体非平衡易位遗传方式的CNV-seq联合G显带核型分析 被引量:2
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作者 侯雅勤 时盼来 +3 位作者 代鹏 陈铎 白莹 孔祥东 《郑州大学学报(医学版)》 CAS 北大核心 2024年第1期50-55,共6页
目的:通过拷贝数变异检测(CNV-seq)联合G显带核型分析对产前诊断和流产的胎儿末端染色体非平衡易位发生频率以及遗传方式进行分析。方法:选取2018年6月至2021年12月在郑州大学第一附属医院经CNV-Seq判定为末端染色体非平衡易位的病例,... 目的:通过拷贝数变异检测(CNV-seq)联合G显带核型分析对产前诊断和流产的胎儿末端染色体非平衡易位发生频率以及遗传方式进行分析。方法:选取2018年6月至2021年12月在郑州大学第一附属医院经CNV-Seq判定为末端染色体非平衡易位的病例,采用外周血G显带核型分析或FISH检测对胎儿父母进行溯源分析。结果:17248例产前诊断和流产病例中,88例检出末端染色体非平衡易位,检出率为0.51%。其中59例行父母G显带核型分析或FISH检测,32例(54.24%)是由于父母为平衡易位导致,27例(45.76%)为新发变异。结论:诊断为末端染色体非平衡易位的病例,父母行G显带核型分析或FISH检测可提高染色体平衡易位携带者的检出率。 展开更多
关键词 拷贝数变异检测 末端染色体非平衡易位 G显带核型分析
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