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虚拟筛选竞争性抑制NDRG3与L-Lactate结合的小分子研究 被引量:5
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作者 曹洪玉 吴艳华 +2 位作者 周兴智 郑学仿 蒋革 《华南师范大学学报(自然科学版)》 CAS 北大核心 2018年第3期58-64,共7页
竞争性抑制NDRG3(N-myc Downstream Regulated Gene 3)蛋白与L-Lactate结合可有效阻遏NDRG3介导的低氧反应.文中通过同源模建技术构建NDRG3蛋白的三维结构,并将L-Lactate对接到NDRG3蛋白的潜在活性位点中,发现L-Lactate主要通过与Asn133... 竞争性抑制NDRG3(N-myc Downstream Regulated Gene 3)蛋白与L-Lactate结合可有效阻遏NDRG3介导的低氧反应.文中通过同源模建技术构建NDRG3蛋白的三维结构,并将L-Lactate对接到NDRG3蛋白的潜在活性位点中,发现L-Lactate主要通过与Asn133、Ala162、His163、His164、Ser235、Pro236及Ala237等氨基酸相互作用结合于NDRG3.对近3 000个化合物进行虚拟筛选,选择4种竞争性抑制最强的化合物作为参考分子分析相互作用关系.结果发现:部分化合物和不同氨基酸能够通过不同的作用力与NDRG3蛋白结合,占据NDRG3蛋白的活性位点,从而竞争性抑制L-Lactate与NDRG3蛋白结合.例如,它们能够与Lys139、Asp143、His163、Arg203产生静电作用;它们与His163形成π-π堆积作用;它们与Phe165、Ala237等产生疏水作用;它们与Asn133、Asp135、Gly140、Arg203、Ser235、Ala237等形成氢键作用.以上数据表明:这些化合物可能成为阻遏NDRG3介导的低氧反应及靶向治疗低氧诱导疾病的候选药物. 展开更多
关键词 NDRG3 l-lactate 竞争性抑制剂 同源模建 分子对接 虚拟筛选
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Conversion of D-glucose to L-lactate via pyruvate by an optimized cell-free enzymatic biosystem containing minimized reactions 被引量:2
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作者 Leipeng Xie Xinlei Wei +5 位作者 Xigui Zhou Dongdong Meng Ruimin Zhou Yi-Heng P.Job Zhang Shuxia Xu Chun You 《Synthetic and Systems Biotechnology》 SCIE 2018年第3期204-210,共7页
Cell-free synthetic enzymatic biosystem is emerging to expand the traditional biotechnological mode by utilizing a number of purified/partially purified enzymes and coenzymes in a single reaction vessel for the produc... Cell-free synthetic enzymatic biosystem is emerging to expand the traditional biotechnological mode by utilizing a number of purified/partially purified enzymes and coenzymes in a single reaction vessel for the production of desired products from low-cost substrates.Here,a cell-free synthetic biosystem containing minimized number of reactions was designed for the conversion of D-glucose to L-lactate via pyruvate.This NADH-balanced biosystem was comprised of only 5 thermophilic enzymes without ATP supplementation.After optimization of enzyme loading amounts,buffer concentration and cofactor concentration,D-glucose was converted to L-lactate with a product yield of∼90%.Our study has provided an emerging platform with potentials in producing pyruvatederived chemicals,and may promote the development of cell-free synthetic enzymatic biosystems for biomanufacturing. 展开更多
关键词 Cell-free synthetic enzymatic biosystem Minimized reactions Thermophilic enzymes l-lactate PYRUVATE Biomanufacturing
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Catalytic reaction mechanism of L-lactate dehydrogenase: an ab initio study
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作者 侯若冰 陈志达 +2 位作者 义祥辉 卞江 徐光宪 《Science China Chemistry》 SCIE EI CAS 2000年第6期587-599,共13页
Studies on the catalytic reaction mechanism of L-lactate dehydrogenase have been carried out by using quantum chemical ab initio calculation at HF/6-31G* level. It is found that the interconversion reaction of pyruvat... Studies on the catalytic reaction mechanism of L-lactate dehydrogenase have been carried out by using quantum chemical ab initio calculation at HF/6-31G* level. It is found that the interconversion reaction of pyruvate to L-lactate is dominated by the hydride ion Hr transfer, and the transfers of the hydride ionH r and protonH r are a quasi-coupled process, in which the energy barrier of the transition state is about 168.37 kJ/mol. It is shown that the reactant complex is 87.61 kJ/mol lower, in energy, than the product complex. The most striking features in our calculated results are that pyridine ring of the model cofactor is a quasi-boat-like configuration in the transited state, which differs from a planar conformation in some previous semiempirical quantum chemical studies. On the other hand, the similarity in the structure and charge between theH r transfer process and the hydrogen bonding with lower barrier indicates that the Hr transfer process occurs by means of an unusual manner. In addition, in the transition state the electrostatic interaction between the substrate and the active site of LDH is quite strong and the polarization of the carbonyl in the substrate is gradually enhanced accompanying the formation of the transition state. These calculated results are well in accord with the previous experimental studies, and indicate that the charge on the hydride ion Hr is only +0.13e in the transition state, which is in agreement with the reported semiempirical quantum chemical calculations. 展开更多
关键词 l-lactate dehydrogenase ob initio calculation reaction mechanism transition state enzymatic catalytic reaction
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Modified catalytic performance of Lactobacillus fermentum l-lactate dehydrogenase by rational design
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作者 Aiai Wu Yajun Bai +2 位作者 TaiPing Fan Xiaohui Zheng Yujie Cai 《Systems Microbiology and Biomanufacturing》 2022年第3期473-486,共14页
l-Lactate dehydrogenases can reduce alpha-keto carboxylic acids asymmetrically and generally have a broad substrate spectrum.l-Lactate dehydrogenase gene(LF-l-LDH0845)with reducing activity towards 3,4-dihydroxyphenyl... l-Lactate dehydrogenases can reduce alpha-keto carboxylic acids asymmetrically and generally have a broad substrate spectrum.l-Lactate dehydrogenase gene(LF-l-LDH0845)with reducing activity towards 3,4-dihydroxyphenylpyruvate and phenylpyruvate was obtained from Lactobacillus fermentum JN248.To change the substrate specificity of LDH0845 and improve its catalytic activity towards large substrates,site-directed mutation of Tyr221 was performed by analyzing the amino acids in the active center.Kinetic parameters show that the kcat values of Y221F mutant on 3,4-dihydroxyphenylpyruvate,4-methyl-2-oxopentanoate,and glyoxylate are 1.21 s^(−1),1.35 s^(−1),and 0.72 s^(−1),respectively,which are 420%,150%and 130%of the wild-type LDH0845.This study shows that the mutations of Y221 can significantly change the substrate specificity of LDH0845,making it become a potential tool enzyme for the reduction of alpha-keto carboxylic acids with large functional groups. 展开更多
关键词 l-lactate dehydrogenases Single-point mutation Substrate specificity Rational design
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Protective effect of estradiol on hepatocytic oxidative damage 被引量:13
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作者 Ichiro Shimizu Toshihiro Omoya Susumu Ito 《World Journal of Gastroenterology》 SCIE CAS CSCD 2002年第2期363-366,共4页
AIM: To examine the protective effect of estradiol on the cultured hepatocytes under oxidative stress. METHODS: Hepatocytes of rat were isolated by using perfusion method, and oxidative stress was induced by a serum-f... AIM: To examine the protective effect of estradiol on the cultured hepatocytes under oxidative stress. METHODS: Hepatocytes of rat were isolated by using perfusion method, and oxidative stress was induced by a serum-free medium and FeNTA. MDA level was determined with TBA method. Cell damage was assessed by LDH assay. Apoptosis of hepatocytes was assessed with cytoflowmetric analysis. Expression of Bcl-xl in cultured hepatocytes was detected by Western blot. The radical-scavenging activity of estradiol was valued by its ability to scavenge the stable free radical of DDPH. RESULTS: Oxidative stress increased LDH from 168 +/- 25 x 10(-6)IU.cell(-1) to 780 +/- 62 x 10(-6)IU.cell(-1) and MDA(from 0.28 +/- 0.07 x 10(-6)nmol.cell(-1) to 1.35 +/- 0.12 x 10(-6)nmol.cell(-1)) levels in cultured hepatocyte, and estradiol inhibited both LDH and MDA production in a dose dependent manner. In the presence of estradiol 10(-6)mol.L(-1), 10( -7 )mol.L(-1) and 10(-8)mol.L(-1),the LDH levels are 410 +/- 53 x 10(-6)IU.cell(-1) (P【0.01 vs oxidative group), 530 +/- 37 X 10(-6)IU.cell(-1 ) (P【0.01 vs oxidative group), 687+/-42 x 10(-6)IU.cell(-1) (P【0.05 vs oxidative group) respectively, and the MDA level are 0.71+/-0.12 x 10(-6)nmol.cell(-1) (P【0.01 vs oxidative group),0.97+/-0.11 x 10(-6)nmol.cell(-1 )(P【0.01 vs oxidative group) and 1.27+/-0.19 x 10(-6)nmol.cell(-1) respectively. Estradiol suppressed apoptosis of hepatocytes induced by oxidative stress, administration of estradiol(10(-6)mol/L)decreased the apoptotic rate of hepatocytes under oxidative stress from 18.6 +/- 1.2% to 6.5 +/-2.5%, P【0.01. Bcl-xl expression was related to the degree of liver cell damage due to oxidative stress, and estradiol showed a protective action. CONCLUSION: Estradiol protects hepatocytes from oxidative damage by means of its antioxidant activity. 展开更多
关键词 Oxidative Stress Animals Apoptosis Cells Cultured ESTRADIOL Female Flow Cytometry HEPATOCYTES l-lactate Dehydrogenase Lipid Peroxidation Male Proto-Oncogene Proteins c-bcl-2 RATS Rats Wistar Thiobarbituric Acid Reactive Substances bcl-X Protein
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Alanyl-glutamine dipeptide inhibits hepatic ischemiareperfusion injury in rats 被引量:6
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作者 Chang-Jun Jia Chao-Liu Dai +3 位作者 Xu Zhang Kai Cui Feng Xu Yong-Qing Xu 《World Journal of Gastroenterology》 SCIE CAS CSCD 2006年第9期1373-1378,共6页
AIM: To investigate the protective effect and mechanism of alanyl-glutamine dipeptide (Ala-GIn) against hepatic ischemia-reperfusion injury in rats. METHODS: Rats were divided into group C as normal control Group ... AIM: To investigate the protective effect and mechanism of alanyl-glutamine dipeptide (Ala-GIn) against hepatic ischemia-reperfusion injury in rats. METHODS: Rats were divided into group C as normal control Group (/7=16) and group G as alanyl-glutamine pretreatment 07=16). Rats were intravenously infused with 0.9% saline solution in group C and Ala-GIn -enriched (2% glutamine) 0.9% saline solution in group G via central venous catheter for three days. Then all rats underwent hepatic warm ischemia for 30 min followed by different periods of reperfusion. Changes in biochemical parameters, the content of glutathione (GSH) and the activity of superoxide dismutase (SOD) in liver tissue, Bcl-2 and Bax protein expression and morphological changes of liver tissue were compared between both groups. RESULTS: One hour after reperfusion, the levels of liver enzymes in group G were significantly lower than those in group C (P〈0.05). Twenty-four hours after reperfusion, the levels of liver enzymes in both groups were markedly recovered and the levels of liver enzyme in group G were also significantly lower than those in group C (P〈0.01). One and 24 h after reperfusion, GSH content in group G was significantly higher than that in group C (P 〈0.05). There was no statistical difference in activities of SOD between the two groups. One and 24 h after reperfusion, the positive expression rate of Bcl-2 protein was higher in group G than in group C (P〈0.05) and the positive expression rate of Bax protein was lower in group G than in group C (P〈0.05). Histological and ultrastructural changes of liver tissue were inhibited in group C compared to group G. CONCLUSION: Our results suggest that Ala-GIn pretreatment provides the rat liver with significant tolerance to warm ischemia-reperfusion injury, which may be mediated partially by enhancing GSH content and regulating the expression of Bcl-2 and Bax proteins in the liver tissue. 展开更多
关键词 Alanine Transaminase Animals DIPEPTIDES GLUTATHIONE Immunohistochemistry l-lactate Dehydrogenase Liver Male Microscopy Electron Proto-Oncogene Proteins c-bcl-2 RATS Rats Wistar Reperfusion Injury Superoxide Dismutase bcl-2-Associated X Protein
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Heat shock protein 72 normothermic ischemia,and the impact of congested portal blood reperfusion on rat liver 被引量:6
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作者 Chao Liu Dai~1 Zhen Long Xia~1 Makoto Kume~2 Yuzo Yamamoto~2 Kazuhiko Yamagami~2 Nobuhiro Ozaki~2 Yoshio Yamaoka~2 ~1Department of Surgery,The Second Clinical College of China Medical University,Shenyang 110003,Liaoning Province,China ~2Department of Gastroenterological Surgery,Kyoto University Graduate School of Medicine,Kyoto,Japan 《World Journal of Gastroenterology》 SCIE CAS CSCD 2001年第3期415-418,共4页
INTRODUCTIONFrom the technical aspect of liver surgery ,control of bleeding during hepatic parenchymal resection is one of the most important procedures in hepatectomy .Pringle,s maneuver ,a temporary cross-clamping ... INTRODUCTIONFrom the technical aspect of liver surgery ,control of bleeding during hepatic parenchymal resection is one of the most important procedures in hepatectomy .Pringle,s maneuver ,a temporary cross-clamping of the hepatoduodnal ligament ,has often been used for this purpose[1],This is the simplest and userul technique to reduce intraoperative blood loss . 展开更多
关键词 Alanine Transaminase Animals Aspartate Aminotransferases HSP72 Heat-Shock Proteins Heat-Shock Proteins l-lactate Dehydrogenase Liver Male Portal System Portasystemic Shunt Surgical RATS Rats Wistar Reperfusion Injury Research Support Non-U.S. Gov't
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Protective effect of exogenous adenosine triphosphate on hypothermically preserved rat liver 被引量:3
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作者 HiroshiEgami MichioOgawa 《World Journal of Gastroenterology》 SCIE CAS CSCD 2004年第6期871-874,共4页
AIM:To clarify the protective effect of exogenous adenosine triphosphate(ATP)on hypothermically preserved rat livers. METHODS:Establishment of continuous hypothermic machine perfusion model,detection of nucleotides in... AIM:To clarify the protective effect of exogenous adenosine triphosphate(ATP)on hypothermically preserved rat livers. METHODS:Establishment of continuous hypothermic machine perfusion model,detection of nucleotides in hepatocytes with HPLC,measurement of activities of LDH and AST in the perfusate,observation of histopathological changes in different experiment groups,and autoradiography were carried out to reveal the underlying mechanism of the protective effect of ATP. RESULTS:The intracellular levels of ATP and EC decreased rapidly after hypothermic preservation in control group,while a higher ATP and EC level,and a slower decreasing rate were observed when ATP-MgCl_2 was added to the perfusate (P<0.01).As compared with the control group,the activities of LDH and AST in the ATP-MgCl_2 group were lower(P<0.05). Furthermore,more severe hepatocyte damage and neutrophil infiltration were observed in the control group.Radioactive [α-^(32)P]ATP entered the hypothermically preserved rat hepatocytes. CONCLUSION:Exogenous ATP has a protective effect on rat livers during hypothermical preservation.However,Mg^(2+) is indispensable,addition of ATP alone produces no protective effect.The underlying mechanism may be that exogenous ATP enters the hypothermically preserved rat liver cells. 展开更多
关键词 CRYOPRESERVATION Adenosine Triphosphate Animals Aspartate Aminotransferases Cryoprotective Agents Female l-lactate Dehydrogenase Liver Male RATS Rats Wistar Research Support Non-U.S. Gov't
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Effect of adrenalectomy on rat epididymidis 被引量:1
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作者 Neena Nair R.S. Bedwal R.S. Mathur 《Asian Journal of Andrology》 SCIE CAS CSCD 2002年第4期273-279,共7页
AIM: To investigate the effect of adrenalectomy (ADX) on the epididymidis of Sprague-Dawley rats. METHODS: The histological, biochemical (cholesterol protein, zinc, copper, alkaline and acid phosphatase aryl sulphatas... AIM: To investigate the effect of adrenalectomy (ADX) on the epididymidis of Sprague-Dawley rats. METHODS: The histological, biochemical (cholesterol protein, zinc, copper, alkaline and acid phosphatase aryl sulphatase, lactic dehydrogenase and leucine amino peptidase) and hormonal (FSH, LH and testosterone) changes of caput and cauda epididymis in ADX rats were observed. RESULTS: Organ wet weight, histological studies and morphometric measurements indicated a cellular degeneration in caput and cauda epididymis of ADX rats. Serum testosterone level was significantly lower in ADX than in sham-operated rats, while the serum FSH and LH were below the detection limit of 1 mIU/mL. The enzymatic activity was higher in ADX than in sham-operated rats. Epididymal zinc level increased whereas copper level decreased in ADX rats compared to the sham-operated. CONCLUSION: Adrenalectomy leads to degeneration of caput and cauda epididymidis epithelial cells as a result of decreased supply of testosterone. 展开更多
关键词 ADRENALECTOMY Acid Phosphatase Alkaline Phosphatase Animals Arylsulfatases Cholesterol Comparative Study Copper EPIDIDYMIS Follicle Stimulating Hormone l-lactate Dehydrogenase Leucyl Aminopeptidase Luteinizing Hormone Male Organ Size RATS Rats Sprague-Dawley Reference Values Research Support Non-U.S. Gov't TESTOSTERONE Time Factors Zinc
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Zinc is a potent heat shock protein inducer during liver cold preservation in rats 被引量:2
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作者 程颖 刘永锋 梁健 《Chinese Medical Journal》 SCIE CAS CSCD 2002年第12期1777-1779,144-145,共3页
OBJECTIVE: A simple liver cold preservation model was established to study the synthesis of heat shock protein 70 (HSP70) induced by zinc (ZnSO(4), i.p.) and its protection during liver cold preservation in rat. METHO... OBJECTIVE: A simple liver cold preservation model was established to study the synthesis of heat shock protein 70 (HSP70) induced by zinc (ZnSO(4), i.p.) and its protection during liver cold preservation in rat. METHODS: Male Wistar rats were divided into 5 groups (n = 6). In control group rat received no pretreatment; in Zn-1 group, Zn-2 group, and Zn-3 group rats were pretreated with zinc sulfate at a dose of 5 mg/kg, 10 mg/kg, 15 mg/kg respectively; and in H group rat received heat shock preconditioning (42.5 degrees C x 15 min). Livers were preserved in UW solution for 6, 12 and 24 h, respectively. HSP70 was analyzed by Western blot. Aspartate transaminase (AST) and lactate dehydrogenase (LDH) values of the perfusion solution and the histology of the liver were evaluated. RESULTS: HSP70 expression was markedly elevated after pretreatment with zinc and heat shock. AST and LDH values in the Zn-1, Zn-2 and H groups were significantly lower than those in the control group, respectively (P 0.05), whereas the AST and LDH values in the Zn-3 group were much higher than those in the control group. Histology results showed that liver injury in the Zn-1, Zn-2 and H groups were minimal, while it was severe in the Zn-3 group. CONCLUSIONS: Zn(2+) is a potent and feasible inducer of HSP expression and is able to protect liver from cold preservation injury. The proper inducing dosage of Zn(2+) ranged from 5 mg/kg to 10 mg/kg. The dosage of 15 mg/kg for Zn(2+) as a HSP inducer is not indicated for its severe toxicity to the liver. 展开更多
关键词 Organ Preservation Animals Aspartate Aminotransferases Dose-Response Relationship Drug HSP70 Heat-Shock Proteins l-lactate Dehydrogenase LIVER Male RATS Rats Wistar ZINC
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Electroacupuncture preconditioning alleviates myocardial ischemia-reperfusion injury through the hypothalamic paraventricular nucleus-interposed nucleus nerve pathway 被引量:5
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作者 WEI Xiaotong LI Liaoyuan +6 位作者 ZHANG Yating SHU Qi WANG Shuaiya CHEN Pianpian HU Ling YU Qing CAI Ronglin 《Journal of Traditional Chinese Medicine》 SCIE CSCD 2022年第3期379-388,共10页
OBJECTIVE:To explore whether the paraventricular nucleus(PVN)participates in regulation of the antimyocardial ischemia-reperfusion injury(MIRI)effect of electroacupuncture(EA)and whether this is achieved through the P... OBJECTIVE:To explore whether the paraventricular nucleus(PVN)participates in regulation of the antimyocardial ischemia-reperfusion injury(MIRI)effect of electroacupuncture(EA)and whether this is achieved through the PVN-interposed nucleus(IN)neural pathway.METHODS:The modeling method of myocardial ischemia reperfusion injury was achieved by ligating the left anterior descending coronary artery in SpragueDawley rats.We used the Powerlab multi-channel physiological recorder system to record electrocardiograms and analyze the changes in ST segment displacement;2,3,5-Triphenyltetrazolium chloride staining was used to observe the percentage of myocardial infarction areas.Detecting cardiac troponin I(cTnI),lactate dehydrogenase(LDH)in serum was done with an enzyme-linked immunosorbent assay kit.Morphological changes in the myocardium were detected in each group with hematoxylin-eosin staining of paraffin sections.Detection of c-fos protein expression in the PVN of the hypothalamus was done with the immuneofluorescence method.The Plexon multi-channel acquisition system recorded PVN neuron discharges and local field potentials in each group of rats.Offline Sorter software was used for cluster analysis.Neuro Explorer software was used to perform autocorrelation,raster and frequency characteristics and spectral energy analysis of neuron signals in each group.RESULTS:Compared with the MIRI model group,the areas of myocardial infarction in the EA group were significantly reduced;the expression of cTnI,LDH in serum was decreased significantly.The firing frequency of pyramidal cells in the PVN was significantly increased and the spectrum energy map showed energy was reduced,c-fos expression in PVN was reduced,this indicated that neuronal activity in the PVN participates in the effect of EA improving myocardial injury.In addition,we used the kainic acid method to lesion the IN and observed that the effect of EA was weakened.For example,the area of myocardial infarction of lesion IN+EA group in rats was significantly increased compared with that resulting from EA group,the expression of cTnI,LDH in serum was significantly increased,the firing frequency of pyramidal cells in the PVN was significantly reduced.A spectral energy diagram shows that the energy after damage was higher than that of EA group.At the same time,the expression of c-fos in the PVN increased again.CONCLUSION:Our results indicated that the PVN-IN nerve pathway may participate as an effective pathway of EA to improve the effect of myocardial injury. 展开更多
关键词 ACUPUNCTURE myocardial reperfusion injury l-lactate dehydrogenase troponin I paraventricular hypothalamic nucleus interposed nucleus
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