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Presence of a long nuclear-localization signal sequence in homeodomain transcription factor Nkx 1.2
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作者 Xinyi LI Lihui CHEN +4 位作者 Xinyuan WANG Chen SUN Guangdong JI Guobin HU Zhenhui LIU 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2024年第2期620-626,共7页
Homeodomains,a 60-amino acid sequence encoded by 180 nucleotides,are highly conserved DNA-binding motifs that are present in a variety of transcription factors in species ranging from yeast to humans.The NKX proteins ... Homeodomains,a 60-amino acid sequence encoded by 180 nucleotides,are highly conserved DNA-binding motifs that are present in a variety of transcription factors in species ranging from yeast to humans.The NKX proteins belong to the homeodomain(HD)-containing transcription factor family.They play vital roles in the regulation of morphogenesis.NKX1-2 is one member of the NKX subfamily.At present,information about its nuclear localization signal(NLS)sequence is limited.We studied the NLS sequence of zebrafish Nkx1.2 by introducing sequence changes such as deletion,mutation,and truncation,and identified an NLS motif(QNRRTKWKKQ)that is localized at the C-terminus of the homeodomain.Moreover,the deletion of two amino acid residues(RR)in this NLS motif prevents Nkx1.2 from entering the nucleus,indicating that the two amino acids are essential for Nkx1.2 nuclear localization.However,the NLS motif alone is unable to target cytoplasmic protein glutathione S-transferase(GST)to the nucleus.An intact homeodomain is necessary for mediating the complete nuclear transport of cytoplasmic protein.Unlike most nuclear import proteins with short NLS sequences,a long NLS is present in zebrafish Nkx1.2.We also demonstrated that the sequences of homeodomain of NKX1.2 are well conserved among different species.This study is informative to verify the function of the NKX1.2 protein. 展开更多
关键词 NKX1.2 NKX protein HOMEODOMAIN nuclear localization signal(nls) nuclear transport
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Identification and characterization of a novel bipartite nuclear localization signal in the hepatitis B virus polymerase 被引量:8
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作者 Joachim Lupberger Stephanie Schaedler +1 位作者 Alexander Peiran Eberhard Hildt 《World Journal of Gastroenterology》 SCIE CAS 2013年第44期8000-8010,共11页
AIM: To characterize the nuclear import of hepatitis B virus (HBV) polymerase (P) and its relevance for the viral life cycle.METHODS: Sequence analysis was performed to predict functional motives within P. Phosphoryla... AIM: To characterize the nuclear import of hepatitis B virus (HBV) polymerase (P) and its relevance for the viral life cycle.METHODS: Sequence analysis was performed to predict functional motives within P. Phosphorylation of P was analyzed by in vitro phosphorylation. Phosphorylation site and nuclear localization signal (NLS) were destroyed by site directed mutagenesis. Functionality of the identified NLS was analyzed by confocal fluorescence microscopy and characterizing the karyopherin binding. Relevance of the structural motives for viral life cycle was studied by infection of primary Tupaia hepatocytes with HBV.RESULTS: We identified by sequence alignment and functional experiments a conserved bipartite NLS containing a casein kinase II (CKII) phosphorylation site located within the terminal protein domain (TP) of the HBV polymerase. Inhibition of CKII impairs the functionality of this NLS and thereby prevents the nuclear import of the polymerase. Binding of the import factor karyopherin-α2 to the polymerase depends on its CKII-mediated phosphorylation of the bipartite NLS. In HBV-infected primary Tupaia hepatocytes CKII inhibition in the early phase (post entry phase) of the infection process prevents the establishment of the infection.CONCLUSION: Based on these data it is suggested that during HBV infection the final import of the genome complex into the nucleus is mediated by a novel bipartite NLS localized in the TP domain of HBV polymerase. 展开更多
关键词 Hepatitis B virus nuclear localization signal Casein kinase II TRAFFICKING REPLICATION
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Developing high-efficiency base editors by combining optimized synergistic core components with new types of nuclear localization signal peptide 被引量:3
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作者 Feipeng Wang Chengwei Zhang +5 位作者 Wen Xu Shuang Yuan Jinling Song Lu Li Jiuran Zhao Jinxiao Yang 《The Crop Journal》 SCIE CAS CSCD 2020年第3期408-417,共10页
The clustered regularly interspaced short palindromic repeats(CRISPR)–CRISPR-associated protein(Cas) system has been widely used for genome editing. In this system, the cytosine base editor(CBE) and adenine base edit... The clustered regularly interspaced short palindromic repeats(CRISPR)–CRISPR-associated protein(Cas) system has been widely used for genome editing. In this system, the cytosine base editor(CBE) and adenine base editor(ABE) allow generating precise and irreversible base mutations in a programmable manner and have been used in many different types of cells and organisms. However, their applications are limited by low editing efficiency at certain genomic target sites or at specific target cytosine(C) or adenine(A) residues. Using a strategy of combining optimized synergistic core components, we developed a new multiplex super-assembled ABE(sABE) in rice that showed higher base-editing efficiency than previously developed ABEs. We also designed a new type of nuclear localization signal(NLS) comprising a FLAG epitope tag with four copies of a codon-optimized NLS(F4NLS^(r2)) to generate another ABE named F4NLS-sABE. This new NLS increased editing efficiency or edited additional A at several target sites. A new multiplex super-assembled CBE(sCBE) and F4NLS^(r2) involved F4NLS-sCBE were also created using the same strategy. F4NLS-sCBE was proven to be much more efficient than sCBE in rice. These optimized base editors will serve as powerful genome-editing tools for basic research or molecular breeding in rice and will provide a reference for the development of superior editing tools for other plants or animals. 展开更多
关键词 CBE ABE nls Developing high-efficiency base editors by combining optimized synergistic core components with new types of nuclear localization signal peptide
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Identification and Characterization of Nuclear Localization Signals within the Nucleocapsid Protein VP15 of White Spot Syndrome Virus
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作者 Li-juan LI Hua-jun ZHANG +1 位作者 Cong ZHANG Zheng-li SHI 《Virologica Sinica》 SCIE CAS CSCD 2009年第1期71-76,共6页
The nucleocapsid protein VP15 of white spot syndrome virus (WSSV) is a basic DNA-binding protein. Three canonical bipartite nuclear localization signals (NLSs), called NLS1 (aa 11-27), NLS2 (aa 33-49) and NLS3 (44-60)... The nucleocapsid protein VP15 of white spot syndrome virus (WSSV) is a basic DNA-binding protein. Three canonical bipartite nuclear localization signals (NLSs), called NLS1 (aa 11-27), NLS2 (aa 33-49) and NLS3 (44-60), have been detected in this protein, using the ScanProsite computer program. To determine the nuclear localization sequence of VP15, the full-length open reading frame, or the sequence of one of the three NLSs, was fused to the green fluorescent protein (GFP) gene, and transiently expressed in insect Sf9 cells. Transfection with full-length VP15 resulted in GFP fluorescence being distributed exclusively in the nucleus. NLS1 alone could also direct GFP to the nucleus, but less efficiently. Neither of the other two NLSs (NLS2 and 3) was functional when expressed alone, but exhibited similar activity to NLS1 when they were expressed as a fusion peptide. Furthermore, a mutated VP15, in which the two basic amino acids (11RR12) of NLS1 were changed to two alanines (11AA12), caused GFP to be localized only in the cytoplasm of Sf9 cells. These results demonstrated that VP15, as a nuclear localization protein, needs cooperation between its three NLSs, and that the two residues (11RR12) of NLS1 play a key role in transporting the protein to the nucleus. 展开更多
关键词 White spot syndrome virus (WSSV) Nucleocapsid protein VP15 nuclear localization signal (nls
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A unique sequence in the N-terminal regulatory region controls the nuclear localization of KLF8 by cooperating with the C-terminal zinc-fingers 被引量:10
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作者 Tina S Mehta Heng Lu +6 位作者 Xianhui Wang Alison M Urvalek Kim-Hang H Nguyen Farah Monzur Jojo D Hammond Jameson Q Ma Jihe Zhao 《Cell Research》 SCIE CAS CSCD 2009年第9期1098-1109,共12页
Kruppel-like factor 8 (KLF8) transcription factor plays a critical role in cell cycle progression, oncogenic transformation, epithelial to mesenchymal transition and invasion. However, its nuclear localization signa... Kruppel-like factor 8 (KLF8) transcription factor plays a critical role in cell cycle progression, oncogenic transformation, epithelial to mesenchymal transition and invasion. However, its nuclear localization signal(s) (NLS) has not been identified. KLF8 shares with other KLFs monopartite NLSs (mNLS) and C2H2 zinc fingers (ZFs), both of which have been shown to be the NLSs for some other KLFs. In this report, using PCR-directed mutagenesis and immunofluorescent microscopy, we show that disruption of the mNLSs, deletion of any single ZF, or mutation of the Zn^2+-binding or DNA-contacting motifs did not affect the nuclear localization of KLF8. Deletion of 〉1.5 ZFs from Cterminus, however, caused cytoplasmic accumulation of KLF8. Surprisingly, deletion of amino acid (aa) 151-200 region almost eliminated KLF8 from the nucleus. S165A, K171E or K171R mutation, or treatment with PKC inhibitor led to partial cytoplasmic accumulation. Co-immunoprecipitation demonstrated that KLF8 interacted with importin-β and this interaction required the ZF motif. Deletion of aa 1-150 or 201-261 region alone did not alter the nuclear localization. BrdU incorporation and cyclin D1 promoter luciferase assays showed that the KLF8 mutants defective in nuclear localization could not promote DNA synthesis or cyclin D1 promoter activation as the wild-type KLF8 did. Taken together, these results suggest that KLF8 has two NLSs, one surrounding S165 and K171 and the other being two tandem ZFs, which are critical for the regulation of KLF8 nuclear localization and its cellular functions. 展开更多
关键词 KLF8 nuclear localization signal IMPORTIN DNA synthesis transcriptional activity
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NLS-KALA-SA纳米粒的制备及细胞核靶向性评价
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作者 马凯伦 谷继伟 颜承云 《华夏医学》 CAS 2024年第2期61-67,共7页
目的构建由融合肽KALA、硬脂酸(SA)、核定位信号(NLS)组成的细胞核靶向多肽纳米载体(NLSKALA-SA,NKSN)。方法采用Fmoc多肽固相合成法人工合成NLS-KALA-SA多肽纳米载体。结果NLSKALA-SA纳米颗粒呈球形,平均尺寸为(76.4±7.6)mm,Zeta... 目的构建由融合肽KALA、硬脂酸(SA)、核定位信号(NLS)组成的细胞核靶向多肽纳米载体(NLSKALA-SA,NKSN)。方法采用Fmoc多肽固相合成法人工合成NLS-KALA-SA多肽纳米载体。结果NLSKALA-SA纳米颗粒呈球形,平均尺寸为(76.4±7.6)mm,Zeta电位为(43.7±5.8)mV。纳米颗粒呈正态分布,粒径分布较窄,多分散度指数(PI<0.3)。细胞摄取实验研究表明,包载香豆素-6(C-6)的NLS-KALA-SA纳米粒子(C-6/NKSN)主要积聚在A549细胞的细胞核中。细胞毒性实验研究表明,在检测浓度为0.01~1000 mg/mL时,NLS-KALA-SA对A549细胞几乎没有细胞毒性。结论NLS-KALA-SA是一种安全无毒且具有跨膜转运和核定位功能的纳米载体,有望成为一种有前景的癌症治疗多肽纳米载体。 展开更多
关键词 核定位信号 KAlA肽 纳米粒 核靶向 肺癌
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杆状病毒表达系统中NLS序列对鸭圆环病毒Cap基因表达的影响及其免疫原性研究
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作者 栾明朱 马跃宇 +4 位作者 刘立 孙莉 李明 费东亮 马鸣潇 《黑龙江畜牧兽医》 CAS 北大核心 2024年第3期66-72,共7页
为了研究核定位信号肽(Nuclear localization signal,NLS)序列对鸭圆环病毒(duck Circovirus,DuCV)Cap蛋白表达的影响,并探究不同免疫策略下重组蛋白的免疫原性,试验将去除和未去除NLS序列的DuCV Cap基因分别克隆至杆状病毒载体pFastBa... 为了研究核定位信号肽(Nuclear localization signal,NLS)序列对鸭圆环病毒(duck Circovirus,DuCV)Cap蛋白表达的影响,并探究不同免疫策略下重组蛋白的免疫原性,试验将去除和未去除NLS序列的DuCV Cap基因分别克隆至杆状病毒载体pFastBacⅠ中,通过杆状病毒表达系统进行表达,分析NLS序列对Cap蛋白表达的影响。采用不同的免疫策略,分别以原核表达系统构建的重组蛋白rCap(rCap组)、杆状病毒表达系统构建的rvAc-Cap(rvAc-Cap组)及rCap与rvAc-Cap联合(Prime-Boost组)作为免疫源免疫Balb/c小鼠,并设置PBS对照组,定期采血,检测DuCV IgG抗体水平、淋巴细胞增殖指数(SI)和γ干扰素(IFN-γ)、白细胞介素-2(IL-2)、白细胞介素-4(IL-4)等细胞因子水平,评价其免疫效果。结果表明:利用杆状病毒表达系统成功表达出重组杆状病毒rvAc-Cap和rvAc-NLS-Cap,且去除NLS序列的Cap基因表达水平更高;小鼠免疫重组蛋白rCap后,重组蛋白rCap与重组杆状病毒rvAc-Cap均能够刺激小鼠产生特异性IgG抗体,三免后Prime-Boost组的IgG抗体水平最高,而与其他免疫组差异不显著(P>0.05);三免后各免疫组淋巴细胞增殖指数显著高于PBS对照组,差异显著(P<0.05);各免疫组IFN-γ、IL-2和IL-4水平与PBS对照组比较差异显著(P<0.05),且Prime-Boost组水平最高。说明在杆状病毒表达系统中去除NLS序列可以提高Cap基因的表达;重组杆状病毒rvAc-Cap能够活化小鼠的免疫系统,刺激小鼠机体产生体液免疫与细胞免疫,而Prime-Boost免疫策略有效提高了免疫效果。 展开更多
关键词 鸭圆环病毒 CAP蛋白 核定位信号肽 杆状病毒表达系统 免疫原性
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急性早幼粒细胞白血病患者血肿瘤细胞NLS-RARα蛋白的表达与定位 被引量:2
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作者 王慧 刘北忠 +4 位作者 阳小群 朱新瑜 马鹏鹏 蒋开玲 钟梁 《第二军医大学学报》 CAS CSCD 北大核心 2015年第3期241-247,共7页
目的验证急性早幼粒细胞白血病(APL)患者血肿瘤细胞中带核定位信号的维甲酸受体α(nuclear localization signal-retinoic acid receptor alpha,NLS-RARα)蛋白的存在及定位。方法采用蛋白质印迹法验证患者血肿瘤细胞中性粒细胞弹性蛋白... 目的验证急性早幼粒细胞白血病(APL)患者血肿瘤细胞中带核定位信号的维甲酸受体α(nuclear localization signal-retinoic acid receptor alpha,NLS-RARα)蛋白的存在及定位。方法采用蛋白质印迹法验证患者血肿瘤细胞中性粒细胞弹性蛋白酶(neutrophil elastase,NE)的存在;提取患者血肿瘤细胞核蛋白,蛋白质印迹法检测细胞核中NLS-RARα蛋白的表达;FITC/DAPI双染色免疫荧光法检测患者血肿瘤细胞中NLS-RARα的表达及定位;FITC/PI双染色激光共聚焦法检测患者血肿瘤细胞中NLS-RARα的表达及定位。以重组腺病毒Ad-NE感染的NB4细胞中NLS-RARα蛋白的表达及定位作阳性对照,以正常人血中性粒细胞中野生型RARα的表达和定位作阴性对照。结果阳性对照组设置成功。APL患者血肿瘤细胞中存在NE且有NLS-RARα蛋白表达。细胞免疫荧光法、激光共聚焦法检测结果提示APL患者血肿瘤细胞NLSRARα蛋白的表达主要位于胞核。结论成功用3种方法检测出APL患者血肿瘤细胞中NLS-RARα蛋白的存在并推测其定位,为进一步研究APL的早期诊断及复发监测提供了新思路。 展开更多
关键词 维甲酸受体Α 核定位信号 中性粒细胞 急性早幼粒细胞白血病
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NLS-RARα与ISCA1相互作用在哺乳动物细胞中的验证 被引量:2
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作者 王东生 王春光 +5 位作者 王翀 曹炬 张国元 王勇 钟梁 刘北忠 《第四军医大学学报》 北大核心 2009年第6期489-492,共4页
目的:利用免疫共沉淀和蛋白质印记技术验证铁硫簇组装蛋白1(ISCA1)与带核定位信号的维甲酸受体α(NLS-RARα)蛋白间的相互作用.方法:构建含融合蛋白的真核表达载体pCMV-HA-NLS-RARα和pCMV-Myc-ISCA1,酶切及测序鉴定正确后,转染人胚肾29... 目的:利用免疫共沉淀和蛋白质印记技术验证铁硫簇组装蛋白1(ISCA1)与带核定位信号的维甲酸受体α(NLS-RARα)蛋白间的相互作用.方法:构建含融合蛋白的真核表达载体pCMV-HA-NLS-RARα和pCMV-Myc-ISCA1,酶切及测序鉴定正确后,转染人胚肾293细胞,利用免疫共沉淀和蛋白质印记技术进一步证实二者之间的相互作用.结果:真核表达载体成功构建并经测序鉴定,转染293细胞,抗HA多克隆抗体沉淀HA-NLS-RARα相互作用蛋白复合物后,用抗Myc mAb进行蛋白印记检测,可以检测到Myc-ISCA1蛋白的表达.结论:分别成功构建了含HA-NLS-RARα与Myc-ISCA1融合蛋白的真核表达载体,并利用免疫共沉淀和蛋白质印记技术在体外证实了NLS-RARα与ISCA1之间存在相互作用. 展开更多
关键词 核定位信号 受体 维甲酸 ISCA1 蛋白质相互作用 免疫共沉淀
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NLS-RARα通过与importin α1/β1(KPNA2/KPNB1)结合入核并抑制U937细胞分化 被引量:1
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作者 叶娇 刘北忠 +9 位作者 李健 熊玲 余莉华 但文冉 刘冬冬 姚娟娟 袁桢 钟鹏强 刘俊梅 钟梁 《细胞与分子免疫学杂志》 CAS CSCD 北大核心 2020年第6期499-506,共8页
目的探究核定位信号-维甲酸受体α(NLS-RARα)异常的核定位对细胞分化的抑制作用以及其核转运机制。方法过表达带有血凝素(HA)标签的NLS-RARα慢病毒和空载体慢病毒转染HEK293T细胞和U937细胞,设为NLS-RARα过表达组(NR组)和阴性对照组... 目的探究核定位信号-维甲酸受体α(NLS-RARα)异常的核定位对细胞分化的抑制作用以及其核转运机制。方法过表达带有血凝素(HA)标签的NLS-RARα慢病毒和空载体慢病毒转染HEK293T细胞和U937细胞,设为NLS-RARα过表达组(NR组)和阴性对照组(NC组)。提取HEK293T细胞与U937细胞NC组和NR组细胞核和细胞质蛋白,Western blot法检测NLS-RARα的定位。同时采用免疫荧光细胞化学染色检测NLS-RARα的定位情况。1α,25-二羟维生素D3(1,25D3)诱导U937细胞分化,实时定量PCR,Western blot法检测细胞CD11b、CCAAT/增强子结合蛋白β(CEBPβ)在mRNA和蛋白水平,采用质谱和免疫共沉淀技术(CoIP)筛选与NLS-RARα相作用的转运蛋白,并且通过小干扰RNA(siRNA)转染验证其对NLS-RARα的核定位作用。结果NLS-RARα主要位于细胞核中。与对照组相比,过表达NLS-RARα组CD11b和CEBPβ的增加减少,说明NLS-RARα对1,25D3诱导的细胞分化有抑制作用。质谱和CoIP结果发现核转运蛋白α2/输入蛋白α1(KPNA2/importinα1)和核转运蛋白β1/输入蛋白β1(KPNB1/importinβ1)与NLS-RARα有相互作用,敲低KPNA2/KPNB1则抑制NLS-RARα入核。结论NLS-RARα通过结合KPNA2/KPNB1入核,抑制U937细胞分化。 展开更多
关键词 核定位信号 维甲酸受体α(RARα) 细胞分化 核转运蛋白α2/输入蛋白α1(KPNA2/importinα1) 核转运蛋白β1/输入蛋白β1(KPNB1/importinβ1)
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Molecular Determinants Responsible for the Subcellular Localization of HSV-1 UL4 Protein
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作者 Wei-wei Pan Jing Long Jun-ji Xing Chun-fu Zheng 《Virologica Sinica》 SCIE CAS CSCD 2011年第5期347-356,共10页
The function of the herpes simplex virus type 1 (HSV-1) UL4 protein is still elusive. Our objective is to investigate the subcellular transport mechanism of the UL4 protein. In this study, fluorescence microscopy wa... The function of the herpes simplex virus type 1 (HSV-1) UL4 protein is still elusive. Our objective is to investigate the subcellular transport mechanism of the UL4 protein. In this study, fluorescence microscopy was employed to investigate the subcellular localization of UL4 and characterize the transport mechanism in living cells. By constructing a series of deletion mutants fused with enhanced yellow fluorescent protein (EYFP), the nuclear export signals (NES) of UL4 were for the first time mapped to amino acid residues 178 to 186. In addition, the N-terminal 19 amino acids are identified to be required for the granule-like cytoplasmic pattem of UL4. Furthermore, the UL4 protein was demonstrated to be exported to the cytoplasm through the NES in a chromosomal region maintenance 1 (CRM1)-dependent manner involving RanGTP hydrolysis 展开更多
关键词 Herpes simplex virus type 1 (HSV-1) UL4 Subcellular localization nuclear export signal (NES) Chromosomal region maintenance 1 (CRM 1)
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Molecular Cloning, Expression and Subcellular Localization of Human Oct-4 Protein
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作者 LI Xiang-qun JIN Ying 《上海交通大学学报(医学版)》 CAS CSCD 北大核心 2006年第3期303-303,共1页
Objective To clone, express, purify human Oct-4 and detect its subcellular localization. Methods Human Oct-4 cDNA was amplified by RT-PCR strategy. Oct-4 protein was induced and expressed in BL21(DE3) strain. Furtherm... Objective To clone, express, purify human Oct-4 and detect its subcellular localization. Methods Human Oct-4 cDNA was amplified by RT-PCR strategy. Oct-4 protein was induced and expressed in BL21(DE3) strain. Furthermore, the protein was purified with Ni-NTA resin. Subsequently, site-directed mutagenesis of Oct-4 (aa 236-240) was introduced. Finally, the subcellular localization of wide type Oct-4 and mutant Oct-4 was examined by immunofluorescent cytochemistry staining and confocal laser scanning microscope analysis. Results The full length cDNA of human Oct-4 was 1083bp. Human Oct-4 encoded a 55 kd protein by prokaryotic vector in E coli. Compared with pure nuclear localization of wide type Oct-4, mutant Oct-4 was mostly enriched in the cytoplasm. Conclusion The cloning, expression and investigation of subcellular localization of human Oct-4 are basis of studying its biological function. 展开更多
关键词 OCT-4 分子克隆 基因表达 定位
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MOLECULAR CLONING, EXPRESSION AND SUBCELLULAR LOCALIZATION OF HUMAN OCT-4 PROTEIN
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作者 李香群 金颖 《Journal of Shanghai Second Medical University(Foreign Language Edition)》 2006年第1期15-19,25,共6页
Objective To clone, express, purify human Oct-4 and detect its subcellular localization. Methods Human Oct-4 cDNA was amplified by RT-PCR strategy. Oct-4 protein was induced and expressed in BL21(DE3) strain. Furtherm... Objective To clone, express, purify human Oct-4 and detect its subcellular localization. Methods Human Oct-4 cDNA was amplified by RT-PCR strategy. Oct-4 protein was induced and expressed in BL21(DE3) strain. Furthermore, the protein was purified with Ni-NTA resin. Subsequently, site-directed mutagen-esis of Oct-4 (aa 236 - 240) was introduced. Finally, the subcellular localization of wide type Oct-4 and mutant Oct-4 was examined by immunofluorescent cytochemistry staining and confocal laser scanning microscope analysis. Results The full length cDNA of human Oct-4 was 1083 bp. Human Oct-4 encoded a 55 kd protein by prokaryotic vector in E coli. Compared with pure nuclear localization of wide type Oct-4, mutant Oct-4 was mostly enriched in the cytoplasm. Conclusion The cloning, expression and investigation of subcellular localization of human Oct-4 are basis of studying its biological function. 展开更多
关键词 Oct-4 pluripotency nuclear localization signal
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Predicting the Nuclear Localization Signals of 107 Types of HPV L1 Proteins by Bioinformatic Analysis 被引量:2
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作者 Jun Yang Yi-Li Wang Lü-Sheng Si 《Genomics, Proteomics & Bioinformatics》 SCIE CAS CSCD 2006年第1期34-41,共8页
In this study, 107 types of human papillomavirus (HPV) L1 protein sequences were obtained from available databases, and the nuclear localization signals (NLSs) of these HPV L1 proteins were analyzed and predicted ... In this study, 107 types of human papillomavirus (HPV) L1 protein sequences were obtained from available databases, and the nuclear localization signals (NLSs) of these HPV L1 proteins were analyzed and predicted by bioinformatic analysis. Out of the 107 types, the NLSs of 39 types were predicted by PredictNLS software (35 types of bipartite NLSs and 4 types of monopartite NLSs). The NLSs of the remaining HPV types were predicted according to the characteristics and the homology of the already predicted NLSs as well as the general rule of NLSs. According to the result, the NLSs of 107 types of HPV L1 proteins were classified into 15 categories. The different types of HPV L1 proteins in the same NLS category could share the similar or the same nucleocytoplasmic transport pathway. They might be used as the same target to prevent and treat different types of HPV infection. The results also showed that bioinformatic technology could be used to analyze and predict NLSs of proteins. 展开更多
关键词 human papillomavirus (HPV) nuclear localization signal (nls BIOINFORMATICS
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Application of a nuclear localization signal gene in transgene mice 被引量:1
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作者 Jingpu Zhang Yuge Wang +3 位作者 Guangsan Li Yu Shen Shaoxia Zhu Miao Du 《Chinese Science Bulletin》 SCIE EI CAS 2002年第3期207-210,共4页
Efficient gene transfer by cytoplasm co-injec-tion will offer a powerful means for transgenic animals. Us-ing co-injection in cytoplasm, two independent gene con-structs, including bovine a-s1-casein-hG-CSF and a mamm... Efficient gene transfer by cytoplasm co-injec-tion will offer a powerful means for transgenic animals. Us-ing co-injection in cytoplasm, two independent gene con-structs, including bovine a-s1-casein-hG-CSF and a mammal expression vector expressing a nuclear localization signal (mNLS), were introduced into fertilized mouse eggs. The target gene construct was docked into host nucleus probably by the nuclear localization signal. Transgene mice have been obtained at 58% (29/50) of integration ratio. Ex-pression level of the positive transgene mice was detected by Western blotting. Maximal expression of human G-CSF was estimated about 540 mg/L of milk. The expression ratio was up to 75% (9/12). The results here have important practical implications for the generation of mammary gland bioreac-tors and other transgene studies. Co-injection of a target gene with an expression vector of a mammal nuclear localization signal by cytoplasm appears to be a useful, efficient and easy strategy for generating 展开更多
关键词 nuclear localization signal CYTOPLASM injection trans-gene MOUSE GRANULOCYTE colony-stimulating factor integration and expression.
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冠状动脉粥样硬化患者单个核细胞关键RNA结合蛋白基因的筛选及验证
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作者 多力昆·木台力甫 阿布都乃比·麦麦提艾力 伊加提·司马义 《山东医药》 CAS 2024年第30期34-38,共5页
目的筛选冠状动脉粥样硬化患者外周血单个核细胞关键RNA结合蛋白基因,并对其进行验证。方法①冠状动脉粥样硬化患者单个核细胞关键RNA结合蛋白基因筛选选择冠状动脉粥样硬化患者5例(观察组)、健康志愿者5例(对照组),采用转录组测序技术... 目的筛选冠状动脉粥样硬化患者外周血单个核细胞关键RNA结合蛋白基因,并对其进行验证。方法①冠状动脉粥样硬化患者单个核细胞关键RNA结合蛋白基因筛选选择冠状动脉粥样硬化患者5例(观察组)、健康志愿者5例(对照组),采用转录组测序技术检测外周血单个核细胞RNA转录组,运用R软件“edgeR”包筛选P<0.05、|logFC|>1、错误发现率<0.05的单个核细胞差异表达基因。从RNA结合蛋白数据库中下载人单个核细胞的RNA结合蛋白相关基因资料,与外周血单个核细胞差异表达基因取交集后获得冠状动脉粥样硬化单个核细胞RNA结合蛋白相关差异表达基因。运用TopHat2、ABLas软件筛选冠状动脉粥样硬化患者单个核细胞差异表达RNA结合蛋白相关基因的可变剪接事件。筛选相对表达量最高的单个核细胞RNA结合蛋白相关差异表达基因为关键RNA结合蛋白基因。②冠状动脉粥样硬化患者单个核细胞关键RNA结合蛋白基因验证另选取冠状动脉粥样硬化患者10例(一组)、健康志愿者10例(二组),抽取外周静脉血后分离外周血单个核细胞,采用qRT-PCR法检测2组RNA结合蛋白关键基因。从GEO数据库(GSE40231、GSE43292、GSE100927、GSE27034)数据集中,检索冠状动脉粥样硬化患者、健康志愿者外周血单个核细胞RNA结合蛋白关键基因表达资料。结果冠状动脉粥样硬化患者单个核细胞的差异RNA结合蛋白相关基因有:过氧化物酶体增殖物激活受体γ共激活因子1α、锌指RNA结合蛋白2、SAM域、SH3域和核定位信号1(SAMSN1)、肝配蛋白A型受体2、RNA结合基序蛋白24、多种剪接形式的RNA结合蛋白2、SH3和多个锚蛋白重复结构域1。与对照组相比,观察组患者单个核细胞RNA结合蛋白相关基因的可变剪接事件多(P<0.05)。关键RNA结合蛋白基因为SAMSN1。与二组相比,一组患者外周血单个核细胞SAMSN1相对表达量升高(P<0.05)。GEO数据库数据结果显示,相比于健康志愿者,冠状动脉粥样硬化患者单个核细胞单个核细胞SAMSN1相对表达量升高(P<0.05)。结论冠状动脉粥样硬化患者单个核细胞关键RNA结合蛋白基因为SAMSN1基因。相比于健康志愿者,冠状动脉粥样硬化患者单个核细胞SAMSN1基因表达升高,可变剪接事件增多。SAMSN1基因可能通过调控RNA结合蛋白相关基因的可变剪接事件,参与冠状动脉粥样硬化的发生发展。 展开更多
关键词 RNA结合蛋白 RNA结合蛋白基因 SH3域和核定位信号1基因 SH3域和核定位信号1 可变剪接 冠状动脉粥样硬化
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A Dual Mechanism Controls Nuclear Localization in the Atypical Basic-Helix-Loop-Helix Protein PAR1 of Arabidopsis thaliana 被引量:2
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作者 Anahit Galstyan Jordi Bou-Torrent +1 位作者 Irma Roig-Villanova Jaime E Martinez-Garcia 《Molecular Plant》 SCIE CAS CSCD 2012年第3期669-677,共9页
PAR1 is an atypical basic-helix-loop-helix (bHLH) protein that negatively regulates the shade avoidance syndrome in Arabidopsis thaliana acting as a transcriptional cofactor. Consistently with this function, PAR1 ha... PAR1 is an atypical basic-helix-loop-helix (bHLH) protein that negatively regulates the shade avoidance syndrome in Arabidopsis thaliana acting as a transcriptional cofactor. Consistently with this function, PAR1 has to be in the nucleus to display biological activity. Previous structure-function analyses revealed that the N-terminal region of PAR1 drives the protein to the nucleus. However, truncated forms of PAR1 lacking this region still display biological activity, implying that PAR1 has additional mechanisms to localize into the nucleus. In this work, we compared the primary structure of PAR1 and various related and unrelated plant bHLH proteins, which led us to suggest that PAR1 contains a non-canonical nuclear localization signal (NLS) in the N-terminal region. By overexpressing truncated and mutated derivatives of PAR1, we have also investigated the importance of other regions of PAR1, such as the acidic and the extended HLH dimerization domains, for its nuclear localization. We found that, in the absence of the N-terminal region, a functional HLH domain is required for nuclear localization. Our results suggest the existence of a dual mechanism for PAR1 nuclear localization: (1) one mediated by the N-terminal non-consensus NLS and (2) a second one that involves interaction with other proteins via the dimerization domain, 展开更多
关键词 nuclear localization signal basic-helix-loop-helix dimerization ability transcriptional cofactors Arabidopsis shade avoidance syndrome
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鸽圆环病毒浙江株△Cap基因的克隆与原核表达 被引量:18
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作者 余旭平 刘晓宁 +3 位作者 郑新添 邬栋栋 刘江梅 竺春 《中国预防兽医学报》 CAS CSCD 北大核心 2007年第9期680-684,共5页
根据已发表的鸽圆环病毒(PiCV)序列,在V1ORF保守序列部位设计引物(目的片段长度为629bp),对浙江某鸽养殖场的病料进行PCR扩增检测,获得阳性样品;应用设计的删除核定位信号外壳蛋白基因(△Cap)的引物,扩增获得680bp的△Cap基因,克隆于pMD... 根据已发表的鸽圆环病毒(PiCV)序列,在V1ORF保守序列部位设计引物(目的片段长度为629bp),对浙江某鸽养殖场的病料进行PCR扩增检测,获得阳性样品;应用设计的删除核定位信号外壳蛋白基因(△Cap)的引物,扩增获得680bp的△Cap基因,克隆于pMD18-T载体,进行测序;将△Cap基因亚克隆到原核表达载体pET-28a进行融合表达,SDS-PAGE电泳检测发现,△Cap融合蛋白经IPTG诱导后在大肠杆菌中以包涵体形式表达,目的蛋白表达量占菌体总蛋白的22.1%。 展开更多
关键词 圆环病毒 核定位信号 △Cap蛋白 表达
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核因子κB的跨核膜转运及其调控机制 被引量:6
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作者 沈利群 徐祥 +1 位作者 吕凤林 梁华平 《生物化学与生物物理进展》 SCIE CAS CSCD 北大核心 2002年第3期368-371,共4页
核因子kappaB (NF κB)是一组重要的转录调节因子 ,当细胞处于静息状态时 ,它与抑制蛋白IκB结合以非活性的形式存在于胞浆中 .当细胞受到多种外界信号刺激 ,NF κB、IκB分别在核定位信号 (NLS)的介导下经核孔复合物 (NPC)转运入核 .... 核因子kappaB (NF κB)是一组重要的转录调节因子 ,当细胞处于静息状态时 ,它与抑制蛋白IκB结合以非活性的形式存在于胞浆中 .当细胞受到多种外界信号刺激 ,NF κB、IκB分别在核定位信号 (NLS)的介导下经核孔复合物 (NPC)转运入核 .在核内 ,NF κB与IκB再次结合成复合物 ,在核转出信号 (NES)介导下 ,经CRM 1依赖的途迳出核 .该过程是能量依赖的主动转运过程 。 展开更多
关键词 核因子КB 跨核膜转运 调控机制
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新城疫病毒M蛋白通过自身核定位信号介导进入宿主细胞核 被引量:4
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作者 段云兵 汪军卿 +3 位作者 仇旭升 谭磊 丁铲 张源淑 《南京农业大学学报》 CAS CSCD 北大核心 2014年第2期105-110,共6页
通过生物信息学方法预测了新城疫病毒(NDV)基质蛋白(M)的细胞核定位信号(NLS),用Overlap-PCR方法缺失NLS基因,分别构建M和M-ΔNLS EGFP重组质粒,转染单层鸡胚成纤维细胞(DF-1),激光共聚焦观察了M蛋白亚细胞定位。结果表明:M蛋白能进入... 通过生物信息学方法预测了新城疫病毒(NDV)基质蛋白(M)的细胞核定位信号(NLS),用Overlap-PCR方法缺失NLS基因,分别构建M和M-ΔNLS EGFP重组质粒,转染单层鸡胚成纤维细胞(DF-1),激光共聚焦观察了M蛋白亚细胞定位。结果表明:M蛋白能进入宿主细胞核中,缺失NLS基因序列之后M蛋白只分布于细胞质中。结论:新城疫病毒M蛋白可以通过其核定位信号进入宿主细胞核。 展开更多
关键词 新城疫病毒 M蛋白 亚细胞定位 核定位信号
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