The flower-meristem-identity gene APETALA2(AP2), one of class-A genes, is involved in the establishment of the floral meristem and the forming of sepals and petals. Codon usage bias(CUB) identifies differences among s...The flower-meristem-identity gene APETALA2(AP2), one of class-A genes, is involved in the establishment of the floral meristem and the forming of sepals and petals. Codon usage bias(CUB) identifies differences among species, meanwhile dynamic analysis of base composition can identify the molecular mechanisms and evolutionary relationships of a specific gene. In this study, eight coding sequences(CDS) of AP2 gene were selected from different plant species using the Gen Bank database. Their nucleotide composition(GC content), genetic index, relative synonymous codon usage(RSCU) and relative codon usage bias(RCUB) were calculated with R Software to compare codon bias and base composition dynamics of AP2 gene codon usage patterns in different plant species. The results showed that the usage of AP2 gene codons from different plant species were influened by GC bias, especially GC3 s. Overall, base composition analysis indicated that the usage frequency of codon AT in the gene coding sequence was higher than GC among AP2 gene CDS from different plant species. Furthermore, most AP2 gene CDSs ended with AT; AGA, GCU and UGU had relatively high RSCU values as the most dominant codon; the usage characteristic of the AP2 gene codon in Malus domestica was similar to that of Vitis vinifera; Paeonia lactiflora was similar to Paeonia suffruticosa and Solanum lycopersicum was similar to Petunia×hybrida. There was a moderate preference in the usage of AP2 gene codon among different plant species from relatively low frequency of optimal codon(Fop) values and high effective number of codons(ENC) value. This study has revealed the usage characteristics of the AP2 gene codon from the comparision of AP2 gene codon preference and base dynamics in different plant species and provide a platform for further study towards transgenic engineering and codon optimization.展开更多
Chalcone isomerase （CHI） is a key enzyme that converts yellow chalcone to colorless naringenin, playing an important regulatory role in color formation of ornamental flowers. We determined the coding sequence of CHI...Chalcone isomerase （CHI） is a key enzyme that converts yellow chalcone to colorless naringenin, playing an important regulatory role in color formation of ornamental flowers. We determined the coding sequence of CHI in herbaceous peony using rapid-amplification of cDNAends （RACE） technology, and subsequently detected the expression pattern of CHI in the inner and outer petals at different developmental stages using qRT-PCR. We cloned the upstream promoter sequences of CHI using genome walking technology and predicted the location of CpG islands and 5＇ truncation. In addition, we con- structed five dual-luciferase reporter gene carriers and detected the promoter activities of different fragments. Our results showed that the full-length cDNA sequence of CHI was 898 bp, and the 5＂-upstream core promoter was located at -1 651 to -2050 bp region, where contained one CpG island （-1 897 to -2010 bp） and several important binding sites of transcription factor, such as Spl, serum response factor （SRF）, activating protein （AP）-2alpha and CCAAT/enhancer binding protein （C/ EBP）alpha. Expression results showed that the expression of CHI at different developmental stages was generally higher in inner petals than those in outer petals, and the maximum at the bud stage （S1）. Thus, this study will provide theoretical basis for an in-depth study of CHI gene function and expression regulation.展开更多
Herbaceous peony（Paeonia lactiflora Pall.） is a famous flower with medicinal values, and its flowers have a number of medicinal constituents, especially flavonoids. In this study, a P. lactiflora cultivar with doubl...Herbaceous peony（Paeonia lactiflora Pall.） is a famous flower with medicinal values, and its flowers have a number of medicinal constituents, especially flavonoids. In this study, a P. lactiflora cultivar with double colors including white outer-petal and yellow inner-petal was used as the experimental materials to perform the qualitative and quantitative analysis of flavonoids by high-performance liquid chromatograph-electrospray ionization-mass spectrometry（HPLC-ESI-MSn） and investigate the expression patterns of flavonoid biosynthetic genes using real-time quantitative polymerase chain reaction（Q-PCR）. The results showed that the colors of both petals gradually weakened with flower development. Moreover, one main anthocyanin composition（peonidin 3,5-di-O-glucoside） and five main anthoxanthin compositions（kaempferol di-hexoside, kaempferol-3-O-malonylglucoside-7-O-glucoside, quercetin-3-O-galactoside, luteolin-7-O-glucoside and isorhamnetin-3-O-glucoside） were found in the both, differing significantly in their peak areas only. Total anthocyanin, anthoxanthin and flavonoid contents in white outer-petal and yellow inner-petal gradually decreased during flower development, and were consistently higher in white outer-petal. Furthermore, the expression patterns of nine structural genes in P. lactiflora flavonoid biosynthetic pathway showed that the expression levels of phenylalanine ammonialyase gene（Pl PAL）, chalcone synthase gene（PlC HS）, flavanone 3-hydroxylase gene（PlF 3H）, anthocyanidin synthase gene（PlA NS） and UDP-glucoside： flavonoid 5-O-glucosyltransferase gene（Pl F5GT） in two petals basically presented declined tendencies, and transcription levels of Pl PAL, Pl CHS, Pl ANS, Pl F3 GT and Pl F5 GT also tended to be higher in white outer-petal, which was correlated with their flavonoid contents. These results would lay a solid foundation for the exploration and utilization of flavonoid resources in P. lactiflora flowers.展开更多
基金supported by the National Natural Science Foundation of China(31372097)the Agricultural Science&Technology Independent Innovation Fund of Jiangsu Province,China(CX(13)2014)
文摘The flower-meristem-identity gene APETALA2(AP2), one of class-A genes, is involved in the establishment of the floral meristem and the forming of sepals and petals. Codon usage bias(CUB) identifies differences among species, meanwhile dynamic analysis of base composition can identify the molecular mechanisms and evolutionary relationships of a specific gene. In this study, eight coding sequences(CDS) of AP2 gene were selected from different plant species using the Gen Bank database. Their nucleotide composition(GC content), genetic index, relative synonymous codon usage(RSCU) and relative codon usage bias(RCUB) were calculated with R Software to compare codon bias and base composition dynamics of AP2 gene codon usage patterns in different plant species. The results showed that the usage of AP2 gene codons from different plant species were influened by GC bias, especially GC3 s. Overall, base composition analysis indicated that the usage frequency of codon AT in the gene coding sequence was higher than GC among AP2 gene CDS from different plant species. Furthermore, most AP2 gene CDSs ended with AT; AGA, GCU and UGU had relatively high RSCU values as the most dominant codon; the usage characteristic of the AP2 gene codon in Malus domestica was similar to that of Vitis vinifera; Paeonia lactiflora was similar to Paeonia suffruticosa and Solanum lycopersicum was similar to Petunia×hybrida. There was a moderate preference in the usage of AP2 gene codon among different plant species from relatively low frequency of optimal codon(Fop) values and high effective number of codons(ENC) value. This study has revealed the usage characteristics of the AP2 gene codon from the comparision of AP2 gene codon preference and base dynamics in different plant species and provide a platform for further study towards transgenic engineering and codon optimization.
基金supported by the Natural Science Fundation of Jiangsu Province,China (14KJB210011)the Opening Project of Jiangsu Key Laboratory for Horticultural Crop Genetic Improvement,China (2014014)the Natural Science Foundation of Yangzhou,China (YZ2014033)
文摘Chalcone isomerase （CHI） is a key enzyme that converts yellow chalcone to colorless naringenin, playing an important regulatory role in color formation of ornamental flowers. We determined the coding sequence of CHI in herbaceous peony using rapid-amplification of cDNAends （RACE） technology, and subsequently detected the expression pattern of CHI in the inner and outer petals at different developmental stages using qRT-PCR. We cloned the upstream promoter sequences of CHI using genome walking technology and predicted the location of CpG islands and 5＇ truncation. In addition, we con- structed five dual-luciferase reporter gene carriers and detected the promoter activities of different fragments. Our results showed that the full-length cDNA sequence of CHI was 898 bp, and the 5＂-upstream core promoter was located at -1 651 to -2050 bp region, where contained one CpG island （-1 897 to -2010 bp） and several important binding sites of transcription factor, such as Spl, serum response factor （SRF）, activating protein （AP）-2alpha and CCAAT/enhancer binding protein （C/ EBP）alpha. Expression results showed that the expression of CHI at different developmental stages was generally higher in inner petals than those in outer petals, and the maximum at the bud stage （S1）. Thus, this study will provide theoretical basis for an in-depth study of CHI gene function and expression regulation.
基金supported by the National Natural Science Foundation of China(31372097 and 31400592)the Major Project of College Natural Science Research of Jiangsu Province,China(13KJA210005)+1 种基金the Opening Project of Jiangsu Key Laboratory for Horticultural Crop Genetic Improvement,China(2014014)the Priority Academic Program Development from Jiangsu Government,China
文摘Herbaceous peony（Paeonia lactiflora Pall.） is a famous flower with medicinal values, and its flowers have a number of medicinal constituents, especially flavonoids. In this study, a P. lactiflora cultivar with double colors including white outer-petal and yellow inner-petal was used as the experimental materials to perform the qualitative and quantitative analysis of flavonoids by high-performance liquid chromatograph-electrospray ionization-mass spectrometry（HPLC-ESI-MSn） and investigate the expression patterns of flavonoid biosynthetic genes using real-time quantitative polymerase chain reaction（Q-PCR）. The results showed that the colors of both petals gradually weakened with flower development. Moreover, one main anthocyanin composition（peonidin 3,5-di-O-glucoside） and five main anthoxanthin compositions（kaempferol di-hexoside, kaempferol-3-O-malonylglucoside-7-O-glucoside, quercetin-3-O-galactoside, luteolin-7-O-glucoside and isorhamnetin-3-O-glucoside） were found in the both, differing significantly in their peak areas only. Total anthocyanin, anthoxanthin and flavonoid contents in white outer-petal and yellow inner-petal gradually decreased during flower development, and were consistently higher in white outer-petal. Furthermore, the expression patterns of nine structural genes in P. lactiflora flavonoid biosynthetic pathway showed that the expression levels of phenylalanine ammonialyase gene（Pl PAL）, chalcone synthase gene（PlC HS）, flavanone 3-hydroxylase gene（PlF 3H）, anthocyanidin synthase gene（PlA NS） and UDP-glucoside： flavonoid 5-O-glucosyltransferase gene（Pl F5GT） in two petals basically presented declined tendencies, and transcription levels of Pl PAL, Pl CHS, Pl ANS, Pl F3 GT and Pl F5 GT also tended to be higher in white outer-petal, which was correlated with their flavonoid contents. These results would lay a solid foundation for the exploration and utilization of flavonoid resources in P. lactiflora flowers.
基金国家重点研发计划(2018YFD1000405)江苏省林业科技创新与推广项目(LYKJ[2018]26)+1 种基金supported by National Key Research and Development Program of China(2018YFD1000405)Jiangsu Forestry Scientific and Technological Innovation and Promotion Program(LYKJ[2018]26)
