We report molecular beam epitaxial growth and electrical and ultraviolet light emitting properties of(AlN)m/(GaN)n superlattices(SLs),where m and n represent the numbers of monolayers.Clear satellite peaks observed in...We report molecular beam epitaxial growth and electrical and ultraviolet light emitting properties of(AlN)m/(GaN)n superlattices(SLs),where m and n represent the numbers of monolayers.Clear satellite peaks observed in XRD 2θ-ωscans and TEM images evidence the formation of clear periodicity and atomically sharp interfaces.For(AlN)m/(GaN)n SLs with an average Al composition of 50%,we have obtained an electron density up to 4.48×10^(19)cm^(-3)and a resistivity of 0.002Ω·cm,and a hole density of 1.83×10^(18)cm^(-3)with a resistivity of 3.722Ω·cm,both at room temperature.Furthermore,the(AlN)m/(GaN)n SLs exhibit a blue shift for their photoluminescence peaks,from 403 nm to 318 nm as GaN is reduced from n=11 to n=4 MLs,reaching the challenging UVB wavelength range.The results demonstrate that the(AlN)m/(GaN)n SLs have the potential to enhance the conductivity and avoid the usual random alloy scattering of the high-Al-composition ternary AlGaN,making them promising functional components in both UVB emitter and AlGaN channel high electron mobility transistor applications.展开更多
Two female-specific AFLP(amplified fragment length polymorphism)markers(named CseF464 and CseF136)were isolated by using one selective primer combination(E-AGC/M-CTG)from the genomic DNA of 20 females and 20 males of ...Two female-specific AFLP(amplified fragment length polymorphism)markers(named CseF464 and CseF136)were isolated by using one selective primer combination(E-AGC/M-CTG)from the genomic DNA of 20 females and 20 males of the half-smooth tongue sole Cynoglossus semilaevis.Both the markers were re-amplified,recovered from the agarose gels,cloned and sequenced.Bioinformatics analysis indicated that the length of the two markers were 468 bp and 134 bp,respectively,and the sequences showed no similarity to each other,as well as to the known sequences deposited in the GenBank database using BLASTn.Two pairs of SCAR(sequence characterized amplified regions)primers were designed based on the sequences of the two female-specific markers.Furthermore,PCR-based genetic sex identification method was developed in Cynoglossus semilaevis.A specific fragment was amplified in all females but not in any males by using these SCAR primers on the initial 20 female and 20 male individuals of Cynoglossus semilaevis.The feasibility of the two SCAR primer pairs was confirmed in additional 100 individuals(50 females and 50 males).This allowed for reliable,rapid molecular identification of genetic sex of the species,genetic mapping on the sex chromosomes and better understanding of the sex determination and sex differentiation in the half-smooth tongue sole.展开更多
Alcohol consumption is a major health issue and associated with human cancers, such as liver and breast cancers. Alcohol was classed as carcinogen to human by IARC. We have performed in vivo and in vitro studies which...Alcohol consumption is a major health issue and associated with human cancers, such as liver and breast cancers. Alcohol was classed as carcinogen to human by IARC. We have performed in vivo and in vitro studies which demonstrate that diluted ethanol promotes cell proliferation and transformation and tumor formation. Consumption of liquor spirits (white wines) is a popular behavior. However, it is unclear whether liquor spirits affect cellular phenotypes of human cancers. At present study, we used diluted ethanol and liquor spirits (Sample #1 and Sample #2) to determine the changes in RNA polymerase III-dependent gene (Pol III gene) transcription, cell growth and colony formation in the different human cancer lines. The results indicate that low concentration of ethanol increases RNA Pol III gene transcription and rate of cell growth. However, both liquor spirits (Sample #1 and Sample #2) inhibit the activity of RNA Pol III genes and repress cell proliferation of the cancer lines, compared to diluted ethanol. The liquor spirits reduce the rate of colony formation of human breast cancer cells and esophageal carcinoma cells. The inhibitions of the liquor spirits to RNA Pol III genes, cell growth and colony formation are in a dose-dependent manner. These new findings suggest that the liquor spirits contain some active components to repress Pol III gene transcription and cell growth caused by ethanol in different human cancer cells.展开更多
A singularly perturbed advection-diffusion two-point Robin boundary value problem whose solution has a single boundary layer is considered. Based on the piecewise linear polynomial approximation, the finite element me...A singularly perturbed advection-diffusion two-point Robin boundary value problem whose solution has a single boundary layer is considered. Based on the piecewise linear polynomial approximation, the finite element method is applied to the problem. Estimation of the error between solution and the finite element approximation is given in energy norm on shishkin-type mesh.展开更多
In the paper, the problems of identification of focus or center for a class of nonlinear systems are studied. As results, the identifying rule for the type of singular point of the system and the calculating formula f...In the paper, the problems of identification of focus or center for a class of nonlinear systems are studied. As results, the identifying rule for the type of singular point of the system and the calculating formula for the focus value are obtained by the classical theory of Poincare and Lyapunov. At the end, the numerical simulation for a polynomial system of seven-degree are showed to corroborate the theoretical results of the method.展开更多
Aquaculture represents the fastest-growing global food production sector,as it has become an essential component of the global food supply.China has the world's largest aquaculture industry in terms of production ...Aquaculture represents the fastest-growing global food production sector,as it has become an essential component of the global food supply.China has the world's largest aquaculture industry in terms of production volume.However,the sustainable development of fish culture is hindered by several concerns,including germplasm degradation and disease outbreaks.The practice of genomic breeding,which relies heavily on genome information and genotypephenotype relationships,has significant potential for increasing the efficiency of aquaculture production.In 2014,the completion of the genome sequencing and annotation of the Chinese tongue sole signified the beginning of the fish genomics era in China.Since then,domestic researchers have made dramatic progress in functional genomic studies.To date,the genomes of more than 60 species of fish in China have been assembled and annotated.Based on these reference genomes,evolutionary,comparative,and functional genomic studies have revolutionized our understanding of a wide range of biologically and economically important traits of fishes,including growth and development,sex determination,disease resistance,metamorphosis,and pigmentation.Furthermore,genomic tools and breeding techniques such as SNP arrays,genomic selection,and genome editing have greatly accelerated genetic improvement through the incorporation of functional genomic information into breeding activities.This review aims to summarize the current status,advances,and perspectives of the genome resources,genomic study of important traits,and genomic breeding techniques of fish in China.The review will provide aquaculture researchers,fish breeders,and farmers with updated information concerning fish genomic research and breeding technology.The summary will help to promote the genetic improvement of production traits and thus will support the sustainable development of fish aquaculture.展开更多
The exption of Chinese natural language processing(NLP)has stimulated research in the broader NLP domain.However,existing large language models have limitations in comprehending and reasoning in Chinese.This paper add...The exption of Chinese natural language processing(NLP)has stimulated research in the broader NLP domain.However,existing large language models have limitations in comprehending and reasoning in Chinese.This paper addresses these limitations by enhancing Chinese language models comprehension and reasoning capabilities while minimizing resource requirements.We propose LLaMA-LoRA,a neural prompt engineering framework that builds upon the LLaMA-13B model and incorporates the Low-Rank Adaptation(LoRA)of Large Language Models technique for refinement.Chain-of-Thought(CoT)are crucial for generating intermediate reasoning chains in language models,but their effectiveness can be limited by isolated language patterns.Erroneous reasoning resulting from conventional prompts negatively impacts model performance.Automatic prompts are introduced to encourage reasoning chain generation and accurate answer inference.Training the model with an extensive corpus of Chinese CoT data enhances its comprehension and reasoning abilities.The LLaMA-LoRA model demonstrates exceptional performance across numerous Chinese language tasks,surpassing benchmark performance achieved by related language models such as GPT-3.5,Chat-GLM,and OpenAssistant,delivering accurate,comprehensive,and professional answers.The availability of our open-source model code facilitates further research in the field of Chinese text logical reasoning thinking chains.展开更多
The aim of this study was to evaluate genetic parameters of growth traits for improving selective breeding in olive flounder(Paralichthys olivaceus).A total of 82 full-sib families from 2 year-classes with complete pe...The aim of this study was to evaluate genetic parameters of growth traits for improving selective breeding in olive flounder(Paralichthys olivaceus).A total of 82 full-sib families from 2 year-classes with complete pedigree information were used to estimate heritabilities and genetic/phenotypic correlations for 4 growth performance traits(body weight BW,total length TL,body height BH and condition factor K)based on uni-trait and multi-trait linear mixed models,respectively.Data were analyzed by the restricted maximum likelihood(REML)method.The heritabilities of BW,TL and BH were 0.81,0.70 and 0.61,which are relatively high,however,heritability for K is low(0.11).For all growth traits,the common full-sib effects(c^(2))were at a low to moderate level(0.14–0.20);the maternal effects(m^(2))of the traits(except K)were also detected(0.15–0.19).The phenotypic and genetic correlations among BW,TL and BH were highly positive(0.70–0.91),however,the correlations between K and the other 3 traits was low or negligible(−0.22–0.26).According to our results,these traits(except K)could be selected and enhanced simultaneously.In addition,direct selection based on TL or BH,which is an easily measurable trait,will be more favorable than selection on BW.Moreover,our results indicated that growth parameters estimated in the juvenile stage could be used as a predictor of growth performance at later growth stages.展开更多
Genomics focuses on dissection of genome structure and function to provide a molecular basis for understanding the genetic background. In a pivotal step,the expense of whole genome sequencing has been largely eliminat...Genomics focuses on dissection of genome structure and function to provide a molecular basis for understanding the genetic background. In a pivotal step,the expense of whole genome sequencing has been largely eliminated by the rapid updating of sequencing technology,leading to increasing numbers of decoded genomes of aquatic organisms, driving the aquaculture industry into the genomic era. Multiple aquatic areas have been influenced by these findings, such as accelerated generation shift in the seed industry and the process of breeding improved lines. In this article, we have summarized the latest domestic and international progress of aquatic animals in nine aspects, including WGS and fine mapping,construction of high density genetic/physical maps, traitrelated marker/genes screening, as well as sex control,genome editing, and other molecular breeding technologies. Finally, the existing problems in this field have been discussed and five future counter measures have been proposed accordingly.展开更多
The half-smooth tongue sole Cynoglossus semilaevis is an important cultured marine fish and a promising model fish for the study of sex determination. Sex-specific genetic linkage maps of half-smooth tongue sole were ...The half-smooth tongue sole Cynoglossus semilaevis is an important cultured marine fish and a promising model fish for the study of sex determination. Sex-specific genetic linkage maps of half-smooth tongue sole were developed with 567 mark- ers （565 microsatellite markers and two SCAR markers）. The parents and F1 progeny （92 individuals） were used as segregating populations. The female map was composed of 480 markers in 21 linkage groups, covering a total of 1388.1 cM, with an average interval 3.06 cM between markers. The male map consisted of 417 markers in 21 linkage groups, spanning 1480.9 cM, with an average interval of 3.75 cM. The female and male maps had 474 and 416 unique positions, respectively. The genome length of half-smooth tongue sole was estimated to be 1522.9 cM for females and 1649.1cM for males. Based on estimations of map length, the female and male maps covered 91.1% and 89.8% of the genome, respectively. Furthermore, two female-specific SCAR mark- ers, f-382 and f-783, were mapped on LG15f （linkage group 15 in female maps）. The present study presents a mid-density genetic linkage map for half-smooth tongue sole. These improved genetic linkage maps may facilitate systematic genome searches to identify quantitative trait loci （QTL）, such as disease resistance, growth and sex-related traits, and are very useful for marker-assisted selection breeding programs for economically important traits in half-smooth tongue sole [Current Zoology 59 （1）： 99-108, 2013].展开更多
In point-of-care testing(POCT),tests are performed near patients and results are given rapidly for timely clinical decisions.Immunodiagnostic assays are one of the most important analyses for detecting and quantifying...In point-of-care testing(POCT),tests are performed near patients and results are given rapidly for timely clinical decisions.Immunodiagnostic assays are one of the most important analyses for detecting and quantifying protein-based biomarkers.However,existing POCT immunodiagnostics mainly rely on the lateral flow assay(LFA),which has limited sensitivity or quantification capability.Although other immunodiagnostic assays,such as enzyme-linked immunosorbent assays(ELISAs),offer more sensitive and quantitative results,they require complex liquid manipulations that are difficult to implement in POCT settings by conventional means.Here,we show the development of DropLab,an automated sample-in-answer-out POCT immunodiagnostic platform based on magnetic digital microfluidic(MDM)technology.DropLab performs microbead-based ELISA in droplets to offer more sensitive and quantitative testing results.The intricate liquid manipulations required for ELISA are accomplished by controlling droplets with magnetic microbeads using MDM technology,which enables us to achieve full automation and easy operations with DropLab.Four ELISAs(the sample in triplicates and a negative control)can be run in parallel on the thermoformed disposable chip,which greatly improves the throughput and accuracy compared to those of other POCT immunodiagnostic devices.DropLab was validated by measuring two protein targets and one antibody target.The testing results showed that the limit of detection(LOD)of DropLab matched that of the conventional ELISA in a microwell plate.DropLab brings MDM one step closer to being a viable medical technology that is ready for real-world POCT applications.展开更多
The levels of the products of RNA polymeraseⅢ-dependent genes(PolⅢgenes),including tRNAs and 5S rRNA,are elevated in transformed and tumor cells,which potentiate tumorigenesis.TFIIB-related factor 1(Brf1)is a key tr...The levels of the products of RNA polymeraseⅢ-dependent genes(PolⅢgenes),including tRNAs and 5S rRNA,are elevated in transformed and tumor cells,which potentiate tumorigenesis.TFIIB-related factor 1(Brf1)is a key transcription factor and specifically regulates the transcription of PolⅢgenes.In vivo and in vitro studies have demonstrated that a decrease in Brf1 reduces PolⅢgene transcription and is sufficient for inhibiting cell transformation and tumor formation.Emerging evidence indicates that dysregulation of Brf1 and PolⅢgenes is linked to the development of hepatocellular carcinoma(HCC)in humans and animals.We have reported that Brf1 is overexpressed in human liver cancer patients and that those with high Brf1 levels have shorter survivals.This review summarizes the effects of dysregulation of these genes on HCC and their regulation by signaling pathways and epigenetics.These novel data should help us determine the molecular mechanisms of HCC from a different perspective and guide the development of therapeutic approaches for HCC patients.展开更多
The Cynoglossus semilaevis(half-smooth tongue sole) is a marine flatfish of great commercial value for fisheries and aquaculture in China.It has a female heterogametic sex determination system(ZW/ZZ) and environmental...The Cynoglossus semilaevis(half-smooth tongue sole) is a marine flatfish of great commercial value for fisheries and aquaculture in China.It has a female heterogametic sex determination system(ZW/ZZ) and environmental factors can induce sex-reversal of females to phenotypic males,suggesting that it is a promising model for the study of sex determination mechanisms.Additionally,females grow much faster than males and it is feasible to improve the aquaculture production through sex control techniques.This paper reviews the progress in research on sex determination mechanisms research in our laboratory.We have completed whole-genome sequencing and revealed the genome organization and sex chromosome evolution of C.semilaevis.A putative male determining gene dmrt1 was identified and DNA methylation was verified as having a crucial role in the sex reversal process.Genetic maps and sex-specific biomarkers have been used in a marker-assisted selection breeding program and for differentiation of the fish sex.Development and improvement of sex control technologies,including artificial gynogenesis and production of breeding fry with high proportion of females,is also reviewed.These research advances have provided insight into the regulation of sex determination and enabled efficient sex management in artificial culturing of C.semilaevis.展开更多
There is still a lack of high-performance terahertz(THz) modulators with wide operation bandwidth and large modulation depth due to the underlying physics limitation behind existing approaches. Meanwhile, for many app...There is still a lack of high-performance terahertz(THz) modulators with wide operation bandwidth and large modulation depth due to the underlying physics limitation behind existing approaches. Meanwhile, for many applications, simple compact THz modulators working straightforward in the transmission mode are also highly desired. Here, we demonstrate a THz modulator with a maximal transmission-amplitude modulation depth of 99.9%(switching ratio of 1000) based on a commonly used silica-on-silicon structure. Different from those reported graphene or metamaterials enhanced proposals, the device we proposed works within a reversible avalanche breakdown region of silicon that has not been studied yet and has the potential to modulate/switch THz waves efficiently. Further, we proved that the modulation depth exceeds 97% in the frequency range from 0.2 to 1 THz in the experiment. The simplicity and generality of this new type of near-perfect THz modulator will undoubtedly attract lots of attention of researchers in the near future due to its potential to be engineered into integrated devices.展开更多
Blind-side hypermelanosis has emerged as a major concern in flatfish aquaculture worldwide,including tongue sole(Cynoglossus semilaevis)in China.The causative gene and the molecular basis are still unclear.In this stu...Blind-side hypermelanosis has emerged as a major concern in flatfish aquaculture worldwide,including tongue sole(Cynoglossus semilaevis)in China.The causative gene and the molecular basis are still unclear.In this study,comparative transcriptome analyses were performed using different skin tissues of tongue sole:ocular-side normal(pigmented)skin,blind-side normal(non-pigmented)skin and blind-side hypermelanotic(pigmented)skin.Finally,60 key hypermelanosis-related genes were mined,providing potential candidate gene resources involved in blind-side hypermelanosis.These genes were selected based on the log2(FoldChange)and false discovery rate(FDR)values(with corresponding P-Values<0.05),and they were verified in other species to assess if they were directly or indirectly related to melanogenesis.The protein-protein interaction network of these 60 genes and the relationship between tyr and other key hypermelanosis-related genes were illustrated.The qRT-PCR validation of 16 differentially expressed genes(DEGs)showed that the data of qRT-PCR were consistent with those of RNA-seq.Further analyses revealed that the selected DEGs were significantly overrepresented in several pigment metabolic processes and in the melanogenesis pathway.Our results may imply that blind-side hypermelanosis is a pattern of environmental regulation of gene expression and adaptation in flatfish.Membrane transport proteins(such as OCA2 and SLC45A2)may serve as a“switch”for melanogenesis in tongue sole.Overall,this study provided novel insights into the molecular mechanism of hypermelanosis in flatfish species and will facilitate future selective breeding of tongue sole for this market-favoured trait in aquaculture.展开更多
基金Project supported by the National Key R&D Program of China(Grant No.2022YFB3605600)the National Natural Science Foundation of China(Grant No.61974065)+3 种基金the Key R&D Project of Jiangsu Province,China(Grant Nos.BE2020004-3 and BE2021026)Postdoctoral Fellowship Program of CPSF(Grant No.GZC20231098)the Jiangsu Special ProfessorshipCollaborative Innovation Center of Solid State Lighting and Energy-saving Electronics。
文摘We report molecular beam epitaxial growth and electrical and ultraviolet light emitting properties of(AlN)m/(GaN)n superlattices(SLs),where m and n represent the numbers of monolayers.Clear satellite peaks observed in XRD 2θ-ωscans and TEM images evidence the formation of clear periodicity and atomically sharp interfaces.For(AlN)m/(GaN)n SLs with an average Al composition of 50%,we have obtained an electron density up to 4.48×10^(19)cm^(-3)and a resistivity of 0.002Ω·cm,and a hole density of 1.83×10^(18)cm^(-3)with a resistivity of 3.722Ω·cm,both at room temperature.Furthermore,the(AlN)m/(GaN)n SLs exhibit a blue shift for their photoluminescence peaks,from 403 nm to 318 nm as GaN is reduced from n=11 to n=4 MLs,reaching the challenging UVB wavelength range.The results demonstrate that the(AlN)m/(GaN)n SLs have the potential to enhance the conductivity and avoid the usual random alloy scattering of the high-Al-composition ternary AlGaN,making them promising functional components in both UVB emitter and AlGaN channel high electron mobility transistor applications.
基金supported by grants from State High-Technology R&D Project of China(863)(2006AA10A403)Shandong Genetic Improvement Key Project for Agricultural Organism,and Taishan Scholar Project of Shandong Province
文摘Two female-specific AFLP(amplified fragment length polymorphism)markers(named CseF464 and CseF136)were isolated by using one selective primer combination(E-AGC/M-CTG)from the genomic DNA of 20 females and 20 males of the half-smooth tongue sole Cynoglossus semilaevis.Both the markers were re-amplified,recovered from the agarose gels,cloned and sequenced.Bioinformatics analysis indicated that the length of the two markers were 468 bp and 134 bp,respectively,and the sequences showed no similarity to each other,as well as to the known sequences deposited in the GenBank database using BLASTn.Two pairs of SCAR(sequence characterized amplified regions)primers were designed based on the sequences of the two female-specific markers.Furthermore,PCR-based genetic sex identification method was developed in Cynoglossus semilaevis.A specific fragment was amplified in all females but not in any males by using these SCAR primers on the initial 20 female and 20 male individuals of Cynoglossus semilaevis.The feasibility of the two SCAR primer pairs was confirmed in additional 100 individuals(50 females and 50 males).This allowed for reliable,rapid molecular identification of genetic sex of the species,genetic mapping on the sex chromosomes and better understanding of the sex determination and sex differentiation in the half-smooth tongue sole.
文摘Alcohol consumption is a major health issue and associated with human cancers, such as liver and breast cancers. Alcohol was classed as carcinogen to human by IARC. We have performed in vivo and in vitro studies which demonstrate that diluted ethanol promotes cell proliferation and transformation and tumor formation. Consumption of liquor spirits (white wines) is a popular behavior. However, it is unclear whether liquor spirits affect cellular phenotypes of human cancers. At present study, we used diluted ethanol and liquor spirits (Sample #1 and Sample #2) to determine the changes in RNA polymerase III-dependent gene (Pol III gene) transcription, cell growth and colony formation in the different human cancer lines. The results indicate that low concentration of ethanol increases RNA Pol III gene transcription and rate of cell growth. However, both liquor spirits (Sample #1 and Sample #2) inhibit the activity of RNA Pol III genes and repress cell proliferation of the cancer lines, compared to diluted ethanol. The liquor spirits reduce the rate of colony formation of human breast cancer cells and esophageal carcinoma cells. The inhibitions of the liquor spirits to RNA Pol III genes, cell growth and colony formation are in a dose-dependent manner. These new findings suggest that the liquor spirits contain some active components to repress Pol III gene transcription and cell growth caused by ethanol in different human cancer cells.
文摘A singularly perturbed advection-diffusion two-point Robin boundary value problem whose solution has a single boundary layer is considered. Based on the piecewise linear polynomial approximation, the finite element method is applied to the problem. Estimation of the error between solution and the finite element approximation is given in energy norm on shishkin-type mesh.
文摘In the paper, the problems of identification of focus or center for a class of nonlinear systems are studied. As results, the identifying rule for the type of singular point of the system and the calculating formula for the focus value are obtained by the classical theory of Poincare and Lyapunov. At the end, the numerical simulation for a polynomial system of seven-degree are showed to corroborate the theoretical results of the method.
基金supported by National Natural Science Foundation of China(32230107)Agriculture Biobreeding-Major Project(2023ZD0405502)+3 种基金the Key Research and Development Project of Shandong Province(2023ZLYS02,2022CXPT002,and 2021LZGC028)Central Public-interest Scientific Institution Basal Research Fund,CAFS(2023TD20)Taishan Scholar Project(tsqn202306295)Taishan Scholar Climbing Project。
文摘Aquaculture represents the fastest-growing global food production sector,as it has become an essential component of the global food supply.China has the world's largest aquaculture industry in terms of production volume.However,the sustainable development of fish culture is hindered by several concerns,including germplasm degradation and disease outbreaks.The practice of genomic breeding,which relies heavily on genome information and genotypephenotype relationships,has significant potential for increasing the efficiency of aquaculture production.In 2014,the completion of the genome sequencing and annotation of the Chinese tongue sole signified the beginning of the fish genomics era in China.Since then,domestic researchers have made dramatic progress in functional genomic studies.To date,the genomes of more than 60 species of fish in China have been assembled and annotated.Based on these reference genomes,evolutionary,comparative,and functional genomic studies have revolutionized our understanding of a wide range of biologically and economically important traits of fishes,including growth and development,sex determination,disease resistance,metamorphosis,and pigmentation.Furthermore,genomic tools and breeding techniques such as SNP arrays,genomic selection,and genome editing have greatly accelerated genetic improvement through the incorporation of functional genomic information into breeding activities.This review aims to summarize the current status,advances,and perspectives of the genome resources,genomic study of important traits,and genomic breeding techniques of fish in China.The review will provide aquaculture researchers,fish breeders,and farmers with updated information concerning fish genomic research and breeding technology.The summary will help to promote the genetic improvement of production traits and thus will support the sustainable development of fish aquaculture.
基金supported by the the Science and Technology Program of Sichuan Province(Grant no.2023YFS0424)the"Open bidding for selecting the best candidates"Science and Technology Project of Chengdu(Grant no.2023-JB00-00020-GX)the National Natural Science Foundation(Grant nos.61902324,11426179,and 61872298).
文摘The exption of Chinese natural language processing(NLP)has stimulated research in the broader NLP domain.However,existing large language models have limitations in comprehending and reasoning in Chinese.This paper addresses these limitations by enhancing Chinese language models comprehension and reasoning capabilities while minimizing resource requirements.We propose LLaMA-LoRA,a neural prompt engineering framework that builds upon the LLaMA-13B model and incorporates the Low-Rank Adaptation(LoRA)of Large Language Models technique for refinement.Chain-of-Thought(CoT)are crucial for generating intermediate reasoning chains in language models,but their effectiveness can be limited by isolated language patterns.Erroneous reasoning resulting from conventional prompts negatively impacts model performance.Automatic prompts are introduced to encourage reasoning chain generation and accurate answer inference.Training the model with an extensive corpus of Chinese CoT data enhances its comprehension and reasoning abilities.The LLaMA-LoRA model demonstrates exceptional performance across numerous Chinese language tasks,surpassing benchmark performance achieved by related language models such as GPT-3.5,Chat-GLM,and OpenAssistant,delivering accurate,comprehensive,and professional answers.The availability of our open-source model code facilitates further research in the field of Chinese text logical reasoning thinking chains.
基金This work was supported by Central Public-interest Scientific Institution Basal Research Fund,CAFS,China(NO.2016HY-ZD0201)Taishan Scholar Project Fund of Shandong of China.
文摘The aim of this study was to evaluate genetic parameters of growth traits for improving selective breeding in olive flounder(Paralichthys olivaceus).A total of 82 full-sib families from 2 year-classes with complete pedigree information were used to estimate heritabilities and genetic/phenotypic correlations for 4 growth performance traits(body weight BW,total length TL,body height BH and condition factor K)based on uni-trait and multi-trait linear mixed models,respectively.Data were analyzed by the restricted maximum likelihood(REML)method.The heritabilities of BW,TL and BH were 0.81,0.70 and 0.61,which are relatively high,however,heritability for K is low(0.11).For all growth traits,the common full-sib effects(c^(2))were at a low to moderate level(0.14–0.20);the maternal effects(m^(2))of the traits(except K)were also detected(0.15–0.19).The phenotypic and genetic correlations among BW,TL and BH were highly positive(0.70–0.91),however,the correlations between K and the other 3 traits was low or negligible(−0.22–0.26).According to our results,these traits(except K)could be selected and enhanced simultaneously.In addition,direct selection based on TL or BH,which is an easily measurable trait,will be more favorable than selection on BW.Moreover,our results indicated that growth parameters estimated in the juvenile stage could be used as a predictor of growth performance at later growth stages.
基金supported by grants from the National Natural Science Foundation of China (31461163005, 31530078)the Taishan Scholar Climbing Project Fund of Shandong of China
文摘Genomics focuses on dissection of genome structure and function to provide a molecular basis for understanding the genetic background. In a pivotal step,the expense of whole genome sequencing has been largely eliminated by the rapid updating of sequencing technology,leading to increasing numbers of decoded genomes of aquatic organisms, driving the aquaculture industry into the genomic era. Multiple aquatic areas have been influenced by these findings, such as accelerated generation shift in the seed industry and the process of breeding improved lines. In this article, we have summarized the latest domestic and international progress of aquatic animals in nine aspects, including WGS and fine mapping,construction of high density genetic/physical maps, traitrelated marker/genes screening, as well as sex control,genome editing, and other molecular breeding technologies. Finally, the existing problems in this field have been discussed and five future counter measures have been proposed accordingly.
文摘The half-smooth tongue sole Cynoglossus semilaevis is an important cultured marine fish and a promising model fish for the study of sex determination. Sex-specific genetic linkage maps of half-smooth tongue sole were developed with 567 mark- ers （565 microsatellite markers and two SCAR markers）. The parents and F1 progeny （92 individuals） were used as segregating populations. The female map was composed of 480 markers in 21 linkage groups, covering a total of 1388.1 cM, with an average interval 3.06 cM between markers. The male map consisted of 417 markers in 21 linkage groups, spanning 1480.9 cM, with an average interval of 3.75 cM. The female and male maps had 474 and 416 unique positions, respectively. The genome length of half-smooth tongue sole was estimated to be 1522.9 cM for females and 1649.1cM for males. Based on estimations of map length, the female and male maps covered 91.1% and 89.8% of the genome, respectively. Furthermore, two female-specific SCAR mark- ers, f-382 and f-783, were mapped on LG15f （linkage group 15 in female maps）. The present study presents a mid-density genetic linkage map for half-smooth tongue sole. These improved genetic linkage maps may facilitate systematic genome searches to identify quantitative trait loci （QTL）, such as disease resistance, growth and sex-related traits, and are very useful for marker-assisted selection breeding programs for economically important traits in half-smooth tongue sole [Current Zoology 59 （1）： 99-108, 2013].
文摘In point-of-care testing(POCT),tests are performed near patients and results are given rapidly for timely clinical decisions.Immunodiagnostic assays are one of the most important analyses for detecting and quantifying protein-based biomarkers.However,existing POCT immunodiagnostics mainly rely on the lateral flow assay(LFA),which has limited sensitivity or quantification capability.Although other immunodiagnostic assays,such as enzyme-linked immunosorbent assays(ELISAs),offer more sensitive and quantitative results,they require complex liquid manipulations that are difficult to implement in POCT settings by conventional means.Here,we show the development of DropLab,an automated sample-in-answer-out POCT immunodiagnostic platform based on magnetic digital microfluidic(MDM)technology.DropLab performs microbead-based ELISA in droplets to offer more sensitive and quantitative testing results.The intricate liquid manipulations required for ELISA are accomplished by controlling droplets with magnetic microbeads using MDM technology,which enables us to achieve full automation and easy operations with DropLab.Four ELISAs(the sample in triplicates and a negative control)can be run in parallel on the thermoformed disposable chip,which greatly improves the throughput and accuracy compared to those of other POCT immunodiagnostic devices.DropLab was validated by measuring two protein targets and one antibody target.The testing results showed that the limit of detection(LOD)of DropLab matched that of the conventional ELISA in a microwell plate.DropLab brings MDM one step closer to being a viable medical technology that is ready for real-world POCT applications.
基金This work was supported in part by NIAAA/NIH grants AA017288,AA021114,AA023247,and AA024169 to SZ.
文摘The levels of the products of RNA polymeraseⅢ-dependent genes(PolⅢgenes),including tRNAs and 5S rRNA,are elevated in transformed and tumor cells,which potentiate tumorigenesis.TFIIB-related factor 1(Brf1)is a key transcription factor and specifically regulates the transcription of PolⅢgenes.In vivo and in vitro studies have demonstrated that a decrease in Brf1 reduces PolⅢgene transcription and is sufficient for inhibiting cell transformation and tumor formation.Emerging evidence indicates that dysregulation of Brf1 and PolⅢgenes is linked to the development of hepatocellular carcinoma(HCC)in humans and animals.We have reported that Brf1 is overexpressed in human liver cancer patients and that those with high Brf1 levels have shorter survivals.This review summarizes the effects of dysregulation of these genes on HCC and their regulation by signaling pathways and epigenetics.These novel data should help us determine the molecular mechanisms of HCC from a different perspective and guide the development of therapeutic approaches for HCC patients.
基金supported by grants from National Natural Science Foundation of China(31130057)‘Taishan Scholar’ Construction Project Special in Shandong ProvinceAgricultural Improved Variety Project of Shandong Province
文摘The Cynoglossus semilaevis(half-smooth tongue sole) is a marine flatfish of great commercial value for fisheries and aquaculture in China.It has a female heterogametic sex determination system(ZW/ZZ) and environmental factors can induce sex-reversal of females to phenotypic males,suggesting that it is a promising model for the study of sex determination mechanisms.Additionally,females grow much faster than males and it is feasible to improve the aquaculture production through sex control techniques.This paper reviews the progress in research on sex determination mechanisms research in our laboratory.We have completed whole-genome sequencing and revealed the genome organization and sex chromosome evolution of C.semilaevis.A putative male determining gene dmrt1 was identified and DNA methylation was verified as having a crucial role in the sex reversal process.Genetic maps and sex-specific biomarkers have been used in a marker-assisted selection breeding program and for differentiation of the fish sex.Development and improvement of sex control technologies,including artificial gynogenesis and production of breeding fry with high proportion of females,is also reviewed.These research advances have provided insight into the regulation of sex determination and enabled efficient sex management in artificial culturing of C.semilaevis.
基金National Key Research and Development Program of China (2017YFC1200400)Distinguished Young Scholars of Sichuan Province (2020JDJQ0008)+1 种基金Foundation of President of China Academy of Engineering Physics(YZJJLX2018001)National Natural Science Foundation of China (11604316, 11704358, 61427814, 61771327,U1730138, U1730246, U1930123)。
文摘There is still a lack of high-performance terahertz(THz) modulators with wide operation bandwidth and large modulation depth due to the underlying physics limitation behind existing approaches. Meanwhile, for many applications, simple compact THz modulators working straightforward in the transmission mode are also highly desired. Here, we demonstrate a THz modulator with a maximal transmission-amplitude modulation depth of 99.9%(switching ratio of 1000) based on a commonly used silica-on-silicon structure. Different from those reported graphene or metamaterials enhanced proposals, the device we proposed works within a reversible avalanche breakdown region of silicon that has not been studied yet and has the potential to modulate/switch THz waves efficiently. Further, we proved that the modulation depth exceeds 97% in the frequency range from 0.2 to 1 THz in the experiment. The simplicity and generality of this new type of near-perfect THz modulator will undoubtedly attract lots of attention of researchers in the near future due to its potential to be engineered into integrated devices.
基金National Natural Science Foundation of China(31702333)China Agriculture Research System(CARS-47-G03)+2 种基金Central Public-interest Scientific Institution Basal Research Fund,CAFS(2020TD20)AoShan Talents Cultivation Program Supported by Qingdao National Laboratory for Marine Science and Technology(No.2017ASTCP-OS15)Taishan Scholar Climbing Project of Shandong.
文摘Blind-side hypermelanosis has emerged as a major concern in flatfish aquaculture worldwide,including tongue sole(Cynoglossus semilaevis)in China.The causative gene and the molecular basis are still unclear.In this study,comparative transcriptome analyses were performed using different skin tissues of tongue sole:ocular-side normal(pigmented)skin,blind-side normal(non-pigmented)skin and blind-side hypermelanotic(pigmented)skin.Finally,60 key hypermelanosis-related genes were mined,providing potential candidate gene resources involved in blind-side hypermelanosis.These genes were selected based on the log2(FoldChange)and false discovery rate(FDR)values(with corresponding P-Values<0.05),and they were verified in other species to assess if they were directly or indirectly related to melanogenesis.The protein-protein interaction network of these 60 genes and the relationship between tyr and other key hypermelanosis-related genes were illustrated.The qRT-PCR validation of 16 differentially expressed genes(DEGs)showed that the data of qRT-PCR were consistent with those of RNA-seq.Further analyses revealed that the selected DEGs were significantly overrepresented in several pigment metabolic processes and in the melanogenesis pathway.Our results may imply that blind-side hypermelanosis is a pattern of environmental regulation of gene expression and adaptation in flatfish.Membrane transport proteins(such as OCA2 and SLC45A2)may serve as a“switch”for melanogenesis in tongue sole.Overall,this study provided novel insights into the molecular mechanism of hypermelanosis in flatfish species and will facilitate future selective breeding of tongue sole for this market-favoured trait in aquaculture.
