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基于生物信息学分析多囊卵巢综合征中影响卵巢生长发育的关键差异基因
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作者 沈蓓蕾 李娜 +1 位作者 李聚学 刘煜 《中国实验诊断学》 2024年第4期455-462,共8页
目的采用生物信息学方法从基因表达数据库(gene expression omnibus,GEO)中分析发掘有关多囊卵巢综合征(polycystic ovarian syndrome,PCOS)的重要基因并对其进行富集分析,为研究PCOS的发病机制提供新的靶点。方法首先从GEO数据库选取... 目的采用生物信息学方法从基因表达数据库(gene expression omnibus,GEO)中分析发掘有关多囊卵巢综合征(polycystic ovarian syndrome,PCOS)的重要基因并对其进行富集分析,为研究PCOS的发病机制提供新的靶点。方法首先从GEO数据库选取两个数据集(GSE171431和GSE59456),使用R语言进行差异分析并获取两个数据集共有的差异基因,然后进行基因本体论(Gene Ontology,GO)和京都基因与基因组百科全书(Kyoto Encyclopedia ofGenes and Genomes,KEGG)分析。根据差异倍数和卵巢功能相关(例如排卵、细胞凋亡、卵泡生长和黄体形成等)筛选出候选关键差异基因,构建了PCOS小鼠模型并用实时定量聚合酶链反应(real-time quantitative polymerase chain reaction,RT-qPCR)法验证这些基因。最后运用比较毒理基因组学数据库(Comparative Toxicogenomics Database,CTD)查找与基因相关的疾病。结果本研究从两个数据集中筛选出27个共有差异基因,根据差异倍数和卵巢功能确定4个下调基因为候选关键差异基因,分别为分泌卷曲相关蛋白4(secreted frizzled-related protein 4,Sfrp4)、信号素3D(Semaphorin-3D,Sema3d)、FK506结合蛋白5(FK506 binding protein 5,Fkbp5)和丝氨酸蛋白酶35(serine protease 35,Prss35),并在小鼠mRNA水平获得验证。此外,CTD数据库结果显示这些基因与生殖疾病关系密切。结论应用生物信息学技术筛选获得的与PCOS发生发展的4个差异基因,分别是Sfrp4,Sema3d,Fkbp5,Prss35,它们与细胞增殖分化、卵泡生长、排卵及代谢稳态有关。这些候选基因为深入探究PCOS的发病机制提供了相关的前期基础。 展开更多
关键词 多囊卵巢综合征 生物信息学 差异表达基因 富集分析
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Preparation and antiviral effects of polysaccharides from Panax japonicus
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作者 ZHU Xuepeng shen beilei +3 位作者 CUI Liangnan SUN Lin GAO Yuwei ZHOU Yifa 《分子科学学报》 CAS 2024年第2期167-173,共7页
Water-soluble polysaccharides were prepared from Panax japonicus by hot water extraction and ethanol precipitation.The polysaccharides were further purified by ion exchange chromatography to obtain neutral and acidic ... Water-soluble polysaccharides were prepared from Panax japonicus by hot water extraction and ethanol precipitation.The polysaccharides were further purified by ion exchange chromatography to obtain neutral and acidic polysaccharides.The neutral polysaccharide fraction mainly contained Glc(90.2%),which was a glucan fraction.The acidic polysaccharide fraction mainly contained GalA(43.6%),Gal(21.7%),and Ara(15.4%),with a degree of methyl-esterification of 20.3%,which was a pectic polysaccharide.The acidic polysaccharide of Panax japonicus could effectively inhibit the replication of human seasonal influenza virus H1N1 and canine influenza virus H3N2 in MDCK cells and A549 cells and significantly reduce the virus titer in infected cells.It also effectively inhibited the number of infected cells of the SARS-CoV-2 South Africa strain and the Omicron strain.The acid polysaccharide of Panax japonicus showed good efficacy against influenza virus and COVID-19 infection,which could be used as a potential antiviral candidate drug molecule in the future. 展开更多
关键词 Panax japonicus C.A.Meyer POLYSACCHARIDES isolation and purification anti-influenza virus inhibition of SARS-CoV-2
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