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基于祖先重组图重建古今人类群体遗传系谱的研究进展及展望 被引量:1
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作者 杨青鑫 王萌鸽 +2 位作者 刘超 袁慧军 何光林 《遗传》 CAS CSCD 北大核心 2024年第10期849-859,共11页
随着古今人群大规模基因组资源的公布、计算生物学工具的革新及大数据挖掘相关算力的提升,基因组学领域正在经历一场革命性的变化。这些进步和变化不仅显著加深了人们对人类起源、迁徙及混合等复杂演化历程的理解,而且也揭示了这些过程... 随着古今人群大规模基因组资源的公布、计算生物学工具的革新及大数据挖掘相关算力的提升,基因组学领域正在经历一场革命性的变化。这些进步和变化不仅显著加深了人们对人类起源、迁徙及混合等复杂演化历程的理解,而且也揭示了这些过程对人类疾病健康状态的影响,加速了人们对人类健康和疾病遗传学基础的研究,还为挖掘人类基因组中记载的群体演化历史及疾病遗传学基础的演化轨迹提供了新的途径。祖先重组图(ancestral recombination graph,ARG)技术,通过分析全基因组中不同区域的重组事件和共祖特征,重建了基因组片段之间的演化关系。ARG记录了所研究基因组序列分歧以来的所有共祖和重组事件,并指明了每个基因组位置的完整系谱,是基因组分析的理想数据结构。本文综述了ARG技术的理论基础及其研究进展,并探讨了其在法医基因组学、群体遗传学、演化医学、医学基因组学等多个学科领域的转化应用和发展前景,以期推动该技术在基因组学研究中的应用,进一步深化对人类基因组的理解。 展开更多
关键词 祖先重组图 遗传系谱 演化基因组学
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Distinguished biological adaptation architecture aggravated population differentiation of Tibeto-Burman-speaking people 被引量:1
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作者 Yuntao Sun Mengge Wang +23 位作者 Qiuxia Sun Yan Liu Shuhan Duan Zhiyong Wang Yunyu Zhou Jun Zhong Yuguo Huang Xinyu Huang qingxin yang Xiangping Li Haoran Su Yan Cai Xiucheng Jiang Jing Chen Jiangwei Yan Shengjie Nie Liping Hu Junbao yang Renkuan Tang Chuan-Chao Wang Chao Liu Xiaohui Deng Libing Yun Guanglin He 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2024年第5期517-530,共14页
Tibeto-Burman(TB)people have endeavored to adapt to the hypoxic,cold,and high-UV high-altitude environments in the Tibetan Plateau and complex disease exposures in lowland rainforests since the late Paleolithic period... Tibeto-Burman(TB)people have endeavored to adapt to the hypoxic,cold,and high-UV high-altitude environments in the Tibetan Plateau and complex disease exposures in lowland rainforests since the late Paleolithic period.However,the full landscape of genetic history and biological adaptation of geographically diverse TB-speaking people,as well as their interaction mechanism,remain unknown.Here,we generate a whole-genome meta-database of 500 individuals from 39 TB-speaking populations and present a comprehensive landscape of genetic diversity,admixture history,and differentiated adaptative features of geographically different TB-speaking people.We identify genetic differentiation related to geography and language among TB-speaking people,consistent with their differentiated admixture process with incoming or indigenous ancestral source populations.A robust genetic connection between the Tibetan-Yi corridor and the ancient Yellow River people supports their Northern China origin hypothesis.We finally report substructure-related differentiated biological adaptative signatures between highland Tibetans and Loloish speakers.Adaptative signatures associated with the physical pigmentation(EDAR and SLC24A5)and metabolism(ALDH9A1)are identified in Loloish people,which differed from the high-altitude adaptative genetic architecture in Tibetan.TB-related genomic resources provide new insights into the genetic basis of biological adaptation and better reference for the anthropologically informed sampling design in biomedical and genomic cohort research. 展开更多
关键词 Tibeto-Burman people Genetic profile Natural selection Genetic diversity Biological adaptation
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Evolutionary history and biological adaptation of Han Chinese people on the Mongolian Plateau 被引量:2
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作者 Xiangping Li Mengge Wang +20 位作者 Haoran Su Shuhan Duan Yuntao Sun Hongyu Chen Zhiyong Wang Qiuxia Sun qingxin yang Jing Chen Ting yang Yuguo Huang Jie Zhong Xiucheng Jiang Jinyue Ma Shijia Chen Yunhui Liu Lintao Luo Xinyu Lin Shengjie Nie Chao Liu Liping Hu Guanglin He 《hLife》 2024年第6期296-313,共18页
Complex demographic processes and natural selection pressures are critical to resolving patterns of the molecular genetic basis of adaptive traits or complex diseases.Recent ancient genome data allow us to trace how k... Complex demographic processes and natural selection pressures are critical to resolving patterns of the molecular genetic basis of adaptive traits or complex diseases.Recent ancient genome data allow us to trace how key traits evolved in different human populations over time,connecting ancient population history with disease susceptibility in western Eurasians.To fill this gap in eastern Eurasians and provide deep insights into the evolutionary history of the populationspecific genetic basis of complex biological traits,we explored the evolutionary basis of adaptive traits in one integrative modern and ancient genomic database,including 225 out of 5583 genomes first reported here.We comprehensively characterized the demographic history and biological adaptation of Han Chinese individuals on the Mongolian Plateau based on the allele frequency spectrum and haplotype-resolved fragments.We found strong genetic homogeneity among geographically different Han populations from Inner Mongolia(IMH).We reconstructed their admixture models and demographic events,revealing that IMH had a close genetic relationship with ancient millet farmers and obtained additional gene flow from Altaic-speaking populations.The enrichment of selected candidate genes suggested that essential metabolism-related genes promoted the rapid adaptation of eastern Eurasians to ancient environmental shifts and dietary changes during agricultural innovations.Evolutionary trajectory reconstruction of metabolism-related genes of methylenetetrahydrofolate reductase(MTHFR)and fatty acid desaturase 1(FADS1)suggested that ancient dietary shifts during the Neolithic transition period promoted the differentiated metabolic rate of folate and fatty acid.We revealed the polygenicity of biological adaptation traits and the pleiotropy of adaptive genes,indicating that complex recent polygenic adaptations,genetic interactions,and genotype–phenotype correlations have contributed to the genetic architecture of complex traits in eastern Eurasians. 展开更多
关键词 demographic history biological adaptation polygenicity and pleiotropy metabolic fitness
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Monitoring the green evolution of vernacular buildings based on deep learning and multi-temporal remote sensing images 被引量:1
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作者 Baohua Wen Fan Peng +4 位作者 qingxin yang Ting Lu Beifang Bai Shihai Wu Feng Xu 《Building Simulation》 SCIE EI CSCD 2023年第2期151-168,共18页
The increasingly mature computer vision(CV)technology represented by convolutional neural networks(CNN)and available high-resolution remote sensing images(HR-RSIs)provide opportunities to accurately measure the evolut... The increasingly mature computer vision(CV)technology represented by convolutional neural networks(CNN)and available high-resolution remote sensing images(HR-RSIs)provide opportunities to accurately measure the evolution of natural and artificial environments on Earth at a large scale.Based on the advanced CNN method high-resolution net(HRNet)and multi-temporal HR-RSIs,a framework is proposed for monitoring a green evolution of courtyard buildings characterized by their courtyards being roofed(CBR).The proposed framework consists of an expert module focusing on scenes analysis,a CV module for automatic detection,an evaluation module containing thresholds,and an output module for data analysis.Based on this,the changes in the adoption of different CBR technologies(CBRTs),including light-translucent CBRTs(LT-CBRTs)and non-lighttranslucent CBRTs(NLT-CBRTs),in 24 villages in southern Hebei were identified from 2007 to 2021.The evolution of CBRTs was featured as an inverse S-curve,and differences were found in their evolution stage,adoption ratio,and development speed for different villages.LT-CBRTs are the dominant type but are being replaced and surpassed by NLT-CBRTs in some villages,characterizing different preferences for the technology type of villages.The proposed research framework provides a reference for the evolution monitoring of vernacular buildings,and the identified evolution laws enable to trace and predict the adoption of different CBRTs in a particular village.This work lays a foundation for future exploration of the occurrence and development mechanism of the CBR phenomenon and provides an important reference for the optimization and promotion of CBRTs. 展开更多
关键词 courtyard buildings EVOLUTION deep learning high-resolution network remote sensing images
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An ultra-low concentration electrolyte with fluorine-free bulky anions for stable potassium metal batteries
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作者 Qinguang Liu Mei Geng +11 位作者 Ting Yu Li Zhang Changdong Wu Jie Liu Shulin Zhao qingxin yang Robin Song Jingjuan Ye Fenfen Wang Yuping Wu Dengji Xiao Yuhui Chen 《Nano Research》 SCIE EI CSCD 2023年第6期8290-8296,共7页
Potassium metal battery is a promising alternative to Li-ion battery for large-scale energy storage due to the abundant potassium resources and high energy density.However,it suffers from rapid capacity fading and saf... Potassium metal battery is a promising alternative to Li-ion battery for large-scale energy storage due to the abundant potassium resources and high energy density.However,it suffers from rapid capacity fading and safety issues due to the uncontrolled dendrite growth.Herein,we design a fluorine-free ultra-low concentration electrolyte(ULCE)with the super bulky[BPh_(4)]^(−) anions for stable potassium metal battery.In this special electrolyte,the migration rate of K+in the electrolyte is about six times faster than that of the[BPh_(4)]^(−) anions because of the super bulky structure of the[BPh_(4)]^(−) anions,thus resulting in a high K^(+)transference number of 0.76.This high transference number can effectively make up for the deficiency of K^(+)in ULCE for ensuring the normal operation of the potassium metal battery.In addition,the improved transference number can also promote the uniform distribution of K^(+)flux on the surface of the K metal anode,resulting in uniform K deposition.As a result,this electrolyte achieves a high K plating/stripping Coulombic efficiency of 92.6%over 200 cycles and a stable discharging/charging for 100 cycles under the full battery configuration(K used as the anode and perylene-3,4,9,10-tetracarboxylic dianhydride used as the cathode). 展开更多
关键词 potassium metal batteries ultra-low concentration electrolyte high transference number
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