Structural variations(SVs),a newly discovered genetic variation,have gained increasing recognition for their importance,yet much about them remains unknown.With the completion of whole-genome sequencing projects in oi...Structural variations(SVs),a newly discovered genetic variation,have gained increasing recognition for their importance,yet much about them remains unknown.With the completion of whole-genome sequencing projects in oil crops,more SVs have been identified,revealing their types,genomic distribution,and characteristics.These findings have demonstrated the crucial roles of SVs in regulating gene expression,driving trait innovation,facilitating domestication,making this an opportune time for a systematic review.We summarized the progress of SV-related studies in oil crops,focusing on the types of SVs and their mechanisms of occurrence,the strategies and methods for SV detection,and the SVs identified in oil crops such as rapeseed,soybean,peanut,and sesame.The various types of SVs,such as presence-absence variations(PAVs),copy number variations(CNVs),and homeologous exchanges(HEs),have been shown.Along with their genomic characterization,their roles in crop domestication and breeding,and regulatory impact on gene expression and agronomic traits have also been demonstrated.This review will provide an overview of the SV research process in oil crops,enabling researchers to quickly understand key information and apply this knowledge in future studies and crop breeding.展开更多
Oilseed rape (Brassica napus) with yellow flowers is an attractive ornamental landscape plant during the flowering period,and the development of different petal colors has become a breeding objective.Although yellowis...Oilseed rape (Brassica napus) with yellow flowers is an attractive ornamental landscape plant during the flowering period,and the development of different petal colors has become a breeding objective.Although yellowish flower color is a common variant observed in field-grown oilseed rape,the genetics behind this variation remains unclear.We obtained a yellowish-white flower (ywf) mutant from Zhongshuang 9 (ZS9) by ethyl methanesulfonate mutagenesis (EMS) treatment.Compared with ZS9,ywf exhibited a lower carotenoid content with a reduced and defective chromoplast ultrastructure in the petals.Genetic analysis revealed that the yellowish-white trait was controlled by a single recessive gene.Using bulked-segregant analysis sequencing (BSA-seq) and kompetitive allele-specific PCR(KASP),we performed map-based cloning of the ywf locus on chromosome A08 and found that ywf harbored a C-to-T substitution in the coding region,resulting in a premature translation termination.YWF,encoding phytoene desaturase 3 (PDS3),was highly expressed in oilseed rape petals and involved in carotenoid biosynthesis.Pathway enrichment analysis of the transcriptome profiles from ZS9 and ywf indicated the carotenoid biosynthesis pathway to be highly enriched.Further analyses of differentially expressed genes and carotenoid components revealed that the truncated Bna A08.PDS3 resulted in decreased carotenoid biosynthesis in the mutant.These results contribute to an understanding of the carotenoid biosynthesis pathway and manipulation of flower-color variation in B.napus.展开更多
Plant architecture can act as a pivotal determinant of crop yield by maximizing photosynthate accumulation in grains,but no B.napus rapeseed ideotype has yet been defined.However,semi-dwarf and compact(SDC)rapeseed pl...Plant architecture can act as a pivotal determinant of crop yield by maximizing photosynthate accumulation in grains,but no B.napus rapeseed ideotype has yet been defined.However,semi-dwarf and compact(SDC)rapeseed plant types with the capacity to maximize silique number per hectare and seed weight per silique are expected to optimize plant architecture for groundbreaking seed yield,avoiding lodging and promoting mechanical harvest(Liu et al.,2022).In this study,we report the mutant dc1,which exhibits DC plant architecture with significantly increased silique number in the main inflorescence compared with currently cultivated high and loose(HL)plant types like those of elite cultivars(Figure 1A and Supplemental Figure 1).展开更多
Tung tree(Vernicia fordii) is an economically important woody oil plant that produces tung oil rich in eleostearic acid. Here, we report a high-quality chromosome-scale genome sequence of tung tree. The genome sequenc...Tung tree(Vernicia fordii) is an economically important woody oil plant that produces tung oil rich in eleostearic acid. Here, we report a high-quality chromosome-scale genome sequence of tung tree. The genome sequence was assembled by combining Illumina short reads, Pacific Biosciences single-molecule real-time long reads, and Hi-C sequencing data. The size of tung tree genome is 1.12 Gb, with 28,422 predicted genes and over 73% repeat sequences. The V. fordii underwent an ancient genome triplication event shared by core eudicots but no further wholegenome duplication in the subsequent ca. 34.55 million years of evolutionary history of the tung tree lineage. Insertion time analysis revealed that repeat-driven genome expansion might have arisen as a result of long-standing long terminal repeat retrotransposon bursts and lack of efficient DNA deletion mechanisms. The genome harbors 88 resistance genes encoding nucleotide-binding sites;17 of these genes may be involved in early-infection stage of Fusarium wilt resistance. Further, 651 oil-related genes were identified, 88 of which are predicted to be directly involved in tung oil biosynthesis. Relatively few phosphoenolpyruvate carboxykinase genes, and synergistic effects between transcription factors and oil biosynthesis-related genes might contribute to the high oil content of tung seed. The tung tree genome constitutes a valuable resource for understanding genome evolution, as well as for molecular breeding and genetic improvements for oil production.展开更多
The effective separation and migration of photogenerated charge carriers in bulk and on the surface of photocatalysts will significantly promote photocatalytic efficiency.However,the synchronous regulation of photocha...The effective separation and migration of photogenerated charge carriers in bulk and on the surface of photocatalysts will significantly promote photocatalytic efficiency.However,the synchronous regulation of photocharges on both counts is challenging.Herein,the simultaneous separation of bulk and surface photocharges is conducted to enhance photocatalytic activity by coupling the surface defects and lattice engineering of bismuth oxybromide.The depth-modulated Bi_(5)O_(7)Br ultrathin nanosheets with an abundance of bismuth in the crystal structure increased the internal electric field,which propelled the separation and migration of photocharges from bulk to the surface.Creation of oxygen vacancies(OVs)on the nanosheet surface forms local electric fields,which can stimulate the migration of charges to active sites on the catalyst surface.Therefore,the OV-assembled Bi_(5)O_(7)Br nanosheets demonstrated enhanced photocatalytic degradation efficiency under simulated solar-light illumination.This study proved the possibility of charge governing via electric field modulation based on an integrated strategy.展开更多
基金funded by the National Natural Science Foundation of China(32370693 and U20A2034)Innovation Program of Chinese Academy of Agricultural Sciences(CAAS-CSIAF-202402)+1 种基金the Young Top-notch Talent Cultivation Program of Hubei Province for Dr.Chaobo Tong,the National Key Research and Development Program of China(2021YFD1600500)Central Public-interest Scientific Institution Basal Research Fund(2021-2060302-061-027,2021-2060302-061-029).
文摘Structural variations(SVs),a newly discovered genetic variation,have gained increasing recognition for their importance,yet much about them remains unknown.With the completion of whole-genome sequencing projects in oil crops,more SVs have been identified,revealing their types,genomic distribution,and characteristics.These findings have demonstrated the crucial roles of SVs in regulating gene expression,driving trait innovation,facilitating domestication,making this an opportune time for a systematic review.We summarized the progress of SV-related studies in oil crops,focusing on the types of SVs and their mechanisms of occurrence,the strategies and methods for SV detection,and the SVs identified in oil crops such as rapeseed,soybean,peanut,and sesame.The various types of SVs,such as presence-absence variations(PAVs),copy number variations(CNVs),and homeologous exchanges(HEs),have been shown.Along with their genomic characterization,their roles in crop domestication and breeding,and regulatory impact on gene expression and agronomic traits have also been demonstrated.This review will provide an overview of the SV research process in oil crops,enabling researchers to quickly understand key information and apply this knowledge in future studies and crop breeding.
基金supported by the National Key Research and Development Program Of China (2016YFD0101007 and 2018YFE0108000)National Natural Science Foundation of China (31770250)+3 种基金the Natural Science Foundation of Hubei Province (2019CFB628)China Agriculture Research System (CARS-12)Agricultural Science and Technology Innovation Program (ASTIP) of Chinese Academy of Agricultural SciencesThe Agricultural Scientific and Technological Research Projects of Guizhou Province (No. Qiankehezhicheng [2019] 2397)。
文摘Oilseed rape (Brassica napus) with yellow flowers is an attractive ornamental landscape plant during the flowering period,and the development of different petal colors has become a breeding objective.Although yellowish flower color is a common variant observed in field-grown oilseed rape,the genetics behind this variation remains unclear.We obtained a yellowish-white flower (ywf) mutant from Zhongshuang 9 (ZS9) by ethyl methanesulfonate mutagenesis (EMS) treatment.Compared with ZS9,ywf exhibited a lower carotenoid content with a reduced and defective chromoplast ultrastructure in the petals.Genetic analysis revealed that the yellowish-white trait was controlled by a single recessive gene.Using bulked-segregant analysis sequencing (BSA-seq) and kompetitive allele-specific PCR(KASP),we performed map-based cloning of the ywf locus on chromosome A08 and found that ywf harbored a C-to-T substitution in the coding region,resulting in a premature translation termination.YWF,encoding phytoene desaturase 3 (PDS3),was highly expressed in oilseed rape petals and involved in carotenoid biosynthesis.Pathway enrichment analysis of the transcriptome profiles from ZS9 and ywf indicated the carotenoid biosynthesis pathway to be highly enriched.Further analyses of differentially expressed genes and carotenoid components revealed that the truncated Bna A08.PDS3 resulted in decreased carotenoid biosynthesis in the mutant.These results contribute to an understanding of the carotenoid biosynthesis pathway and manipulation of flower-color variation in B.napus.
基金supported by the National Natural Science Foundation of China(32101813,32370693,and 32300559)the Agricultural Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences(CAAS-OCRI-XKPY-202104 and CAAS-ZDRW202105)the Young Top-notch Talent Cultivation Program of Hubei Province.
文摘Plant architecture can act as a pivotal determinant of crop yield by maximizing photosynthate accumulation in grains,but no B.napus rapeseed ideotype has yet been defined.However,semi-dwarf and compact(SDC)rapeseed plant types with the capacity to maximize silique number per hectare and seed weight per silique are expected to optimize plant architecture for groundbreaking seed yield,avoiding lodging and promoting mechanical harvest(Liu et al.,2022).In this study,we report the mutant dc1,which exhibits DC plant architecture with significantly increased silique number in the main inflorescence compared with currently cultivated high and loose(HL)plant types like those of elite cultivars(Figure 1A and Supplemental Figure 1).
基金supported by the National Key R&D Program of China(Grant No.2017YFD0600703)the National Forestry Public Welfare Industry Research Project of China(Grant No.201204403)+2 种基金the Outstanding Youth Project of the Education Department of Hunan Province,China(Grant No.17B279)the US Department of AgricultureAgricultural Research Service(USDA-ARS)National Program for Quality and Utilization of Agricultural Products(NP 306Grant No.CRIS 6054-41000-103-00-D).
文摘Tung tree(Vernicia fordii) is an economically important woody oil plant that produces tung oil rich in eleostearic acid. Here, we report a high-quality chromosome-scale genome sequence of tung tree. The genome sequence was assembled by combining Illumina short reads, Pacific Biosciences single-molecule real-time long reads, and Hi-C sequencing data. The size of tung tree genome is 1.12 Gb, with 28,422 predicted genes and over 73% repeat sequences. The V. fordii underwent an ancient genome triplication event shared by core eudicots but no further wholegenome duplication in the subsequent ca. 34.55 million years of evolutionary history of the tung tree lineage. Insertion time analysis revealed that repeat-driven genome expansion might have arisen as a result of long-standing long terminal repeat retrotransposon bursts and lack of efficient DNA deletion mechanisms. The genome harbors 88 resistance genes encoding nucleotide-binding sites;17 of these genes may be involved in early-infection stage of Fusarium wilt resistance. Further, 651 oil-related genes were identified, 88 of which are predicted to be directly involved in tung oil biosynthesis. Relatively few phosphoenolpyruvate carboxykinase genes, and synergistic effects between transcription factors and oil biosynthesis-related genes might contribute to the high oil content of tung seed. The tung tree genome constitutes a valuable resource for understanding genome evolution, as well as for molecular breeding and genetic improvements for oil production.
基金This work was supported by the National Natural Science Foundation of China(No.52002089)the innovation team of Xiangsi Lake Young Scholars of Guangxi Minzu University(No.2020RSCXSHQN06)the training program for thousands of backbone young teachers in Guangxi universities,and the undergraduate innovation and entrepreneurship project of Guangxi Minzu University(No.202110608002).
文摘The effective separation and migration of photogenerated charge carriers in bulk and on the surface of photocatalysts will significantly promote photocatalytic efficiency.However,the synchronous regulation of photocharges on both counts is challenging.Herein,the simultaneous separation of bulk and surface photocharges is conducted to enhance photocatalytic activity by coupling the surface defects and lattice engineering of bismuth oxybromide.The depth-modulated Bi_(5)O_(7)Br ultrathin nanosheets with an abundance of bismuth in the crystal structure increased the internal electric field,which propelled the separation and migration of photocharges from bulk to the surface.Creation of oxygen vacancies(OVs)on the nanosheet surface forms local electric fields,which can stimulate the migration of charges to active sites on the catalyst surface.Therefore,the OV-assembled Bi_(5)O_(7)Br nanosheets demonstrated enhanced photocatalytic degradation efficiency under simulated solar-light illumination.This study proved the possibility of charge governing via electric field modulation based on an integrated strategy.
