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Clinical and molecular significance of homologous recombination deficiency positive non-small cell lung cancer in Chinese population:An integrated genomic and transcriptional analysis
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作者 Yifei Wang Yidan Ma +14 位作者 Lei He Jun Du Xiaoguang Li Peng Jiao Xiaonan Wu Xiaomao xu Wei Zhou Li Yang Jing Di Changbin Zhu liming xu Tianlin Sun Lin Li Dongge Liu Zheng Wang 《Chinese Journal of Cancer Research》 SCIE CAS CSCD 2024年第3期282-297,共16页
Objective:The clinical significance of homologous recombination deficiency(HRD)in breast cancer,ovarian cancer,and prostate cancer has been established,but the value of HRD in non-small cell lung cancer(NSCLC)has not ... Objective:The clinical significance of homologous recombination deficiency(HRD)in breast cancer,ovarian cancer,and prostate cancer has been established,but the value of HRD in non-small cell lung cancer(NSCLC)has not been fully investigated.This study aimed to systematically analyze the HRD status of untreated NSCLC and its relationship with patient prognosis to further guide clinical care.Methods:A total of 355 treatment-naïve NSCLC patients were retrospectively enrolled.HRD status was assessed using the AmoyDx Genomic Scar Score(GSS),with a score of≥50 considered HRD-positive.Genomic,transcriptomic,tumor microenvironmental characteristics and prognosis between HRD-positive and HRDnegative patients were analyzed.Results:Of the patients,25.1%(89/355)were HRD-positive.Compared to HRD-negative patients,HRDpositive patients had more somatic pathogenic homologous recombination repair(HRR)mutations,higher tumor mutation burden(TMB)(P<0.001),and fewer driver gene mutations(P<0.001).Furthermore,HRD-positive NSCLC had more amplifications in PI3K pathway and cell cycle genes,MET and MYC in epidermal growth factor receptor(EGFR)/anaplastic lymphoma kinase(ALK)mutant NSCLC,and more PIK3CA and AURKA in EGFR/ALK wild-type NSCLC.HRD-positive NSCLC displayed higher tumor proliferation and immunosuppression activity.HRD-negative NSCLC showed activated signatures of major histocompatibility complex(MHC)-II,interferon(IFN)-γand effector memory CD8+T cells.HRD-positive patients had a worse prognosis and shorter progressionfree survival(PFS)to targeted therapy(first-and third-generation EGFR-TKIs)(P=0.042).Additionally,HRDpositive,EGFR/ALK wild-type patients showed a numerically lower response to platinum-free immunotherapy regimens.Conclusions:Unique genomic and transcriptional characteristics were found in HRD-positive NSCLC.Poor prognosis and poor response to EGFR-TKIs and immunotherapy were observed in HRD-positive NSCLC.This study highlights potential actionable alterations in HRD-positive NSCLC,suggesting possible combinational therapeutic strategies for these patients. 展开更多
关键词 Non-small cell lung cancer homologous recombination deficiency genetic alterations transcriptional analysis tumor microenvironment PROGNOSIS
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晚期小细胞肺癌和非小细胞肺癌不同转移部位预后意义的比较 被引量:17
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作者 孟春柳 徐利明 +2 位作者 魏佳 田佳 赵路军 《中国肿瘤临床》 CAS CSCD 北大核心 2019年第21期1101-1106,共6页
目的:明确不同转移部位对小细胞肺癌(small cell lung cancer,SCLC)和非小细胞肺癌(non-small cell lung cancer,NSCLC)预后影响的差异。方法:回顾性分析天津医科大学肿瘤医院2012年1月至2017年12月确诊为晚期SCLC 266例和2015年1月至2... 目的:明确不同转移部位对小细胞肺癌(small cell lung cancer,SCLC)和非小细胞肺癌(non-small cell lung cancer,NSCLC)预后影响的差异。方法:回顾性分析天津医科大学肿瘤医院2012年1月至2017年12月确诊为晚期SCLC 266例和2015年1月至2017年12月确诊为晚期NSCLC 275例,总计541例患者病例资料。主要观察指标为总生存期(overall survival,OS)。结果:在SCLC中,与多器官转移者相比,单器官转移者的预后更好(P=0.0004);在NSCLC中,单器官与多器官转移者之间未见到明显的生存差异(P=0.451)。在SCLC单器官转移者中,脑转移的预后相对最好,骨转移的预后相对较差,肝转移的预后最差,三者的中位生存时间(median survival time,MST)分别为14.5、11.5和10.3个月;在NSCLC单器官转移者中,肺内转移的预后最佳,肝和肾上腺转移者的预后较差,三者的MST分别为未达到、7.6和7.3个月。在SCLC多器官转移者中,有骨(P=0.046)、肝(P=0.019)转移者预后较差;而有无脑(P=0.995)、肺(P=0.847)、肾上腺(P=0.255)转移对患者的预后无显著性影响;在NSCLC多器官转移的患者中,有脑(P=0.054)、肾上腺转移(P=0.006)的患者预后较差;有肺(P=0.008)转移的患者预后较好;而有无骨(P=0.091)、肝(P=0.300)转移对患者的预后无显著性影响。结论:不同转移部位对SCLC和NSCLC预后的影响存在差异。 展开更多
关键词 肺癌 小细胞肺癌 非小细胞肺癌 转移部位 预后
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岳西黑猪与北京黑猪和巴克夏猪的杂交效果分析 被引量:1
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作者 章会斌 张晓东 +8 位作者 周忍 许黎明 赵冬冬 程学远 王南山 朱显文 储诚才 兰延坤 殷宗俊 《猪业科学》 2020年第10期126-129,共4页
岳西黑猪为安徽省岳西县独有的地方猪品种。文章通过繁殖、胴体、肉质性能的测定和比较分析,综合评价北京黑猪和巴克夏猪与岳西黑猪的杂交效果,筛选可推广的杂交组合模式,为岳西黑猪的杂交利用奠定基础,旨在更好地促进岳西黑猪产业化开发。
关键词 岳西黑猪 杂交 繁殖性能 胴体性能 肉质性能
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Effects of Bag Type on Fruit Quality of Red Massh Grapefruit 被引量:1
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作者 Jie YANG Haiyan GAN +3 位作者 Bo WANG Changpeng YANG liming xu Xiaolong ZHAO 《Agricultural Biotechnology》 CAS 2021年第3期130-133,共4页
[Objectives]The effects of bag types on the appearance and internal quality of red Massh grapefruit were studied.[Methods]Outer-yellow inner-black double-layer pomelo special paper bags,white single-layer paper bags,y... [Objectives]The effects of bag types on the appearance and internal quality of red Massh grapefruit were studied.[Methods]Outer-yellow inner-black double-layer pomelo special paper bags,white single-layer paper bags,yellow plastic film bags,and red plastic film bags were used to cover the fruit of red Massh grapefruit.With the fruit free of bagging as a control,the effects of fruit bags with different materials were compared.[Results]The four kinds of fruit bag treatments effectively reduced pests and diseases,and increased the good fruit rate,and the effects of paper bag treatments were better than those of film bags.The outer-yellow inner-black double-layer pomelo special paper bags had good air permeability and were easy to operate.The bagged fruit had a smooth and beautiful surface and showed a unique uniform pink color after removing the bags.The fruit had moderate sour and sweet flavor and good overall benefits.It is worthy of popularization and application.[Conclusions]Fruit bagging has good economic benefits,and it is recommended to use the outer-yellow inner-black double-layer pomelo special paper bags. 展开更多
关键词 Red Massh grapefruit Bagging type Fruit appearance QUALITY
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Dosimetric consequences of tumor volume changes after kilovoltage cone-beam computed tomography for non-operative lung cancer during adaptive intensity-modulated radiotherapy or fractionated stereotactic radiotherapy
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作者 Jian Hu Ximing xu +4 位作者 Guangjin Yuan Wei Ge liming xu Aihua Zhang Junjian Deng 《Oncology and Translational Medicine》 CAS 2015年第5期195-200,共6页
Objective The aim of this study was to investigate tumor volume changes with kilovoltage cone-beam computed tomography (kV-CBCT) and their dosimetric consequences for non-operative lung cancer during intensity-modul... Objective The aim of this study was to investigate tumor volume changes with kilovoltage cone-beam computed tomography (kV-CBCT) and their dosimetric consequences for non-operative lung cancer during intensity-modulated radiotherapy (IMRT) or fractionated stereotactic radiotherapy. Methods Eighteen patients with non-operative lung cancer who received IMRT consisting of 1.8-2.2 Gy/fraction and five fractions per week or stereotactic radiotherapy with 5-8 Gy/fraction and three fractions a week were studied, kV-CBCT was performed once per week during IMRT and at every fraction during stereotactic radiotherapy. The gross tumor volume (GTV) was contoured on the kV-CBCT images, and adaptive treatment plans were created using merged kV-CBCT and primary planning computed tomogra- phy image sets. Tumor volume changes and dosimetric parameters, including the minimum dose to 95% (D95) or 1% (D1) of the planning target volume (PTV), mean lung dose (MLD), and volume of lung tissue that received more than 5 (Vs), 10 (Vl0), 20 (V20), and 30 (V30) Gy were retrospectively analyzed. Results The average maximum change in GTV observed during IMRT or fractionated stereotactic radio- therapy was -25.85% (range, -13.09% --56.76%). The D95 and Dr of PTV for the adaptive treatment plans in all patients were not significantly different from those for the initial or former adaptive treatment plans. In patients with tumor volume changes of 〉20% in the third or fourth week of treatment during IMRT, adap- tive treatment plans offered clinically meaningful decreases in MLD and V5, V10, V20, and V30; however, in patients with tumor volume changes of 〈 20% in the third or fourth week of treatment as well as in patients with stereotactic radiotherapy, there were no significant or clinically meaningful decreases in the dosimetric parameters. Conclusion Adaptive treatment planning for decreasing tumor volume during IMRT may be beneficial for patients who experience tumor volume changes of 〉20% in the third or fourth week of treatment. 展开更多
关键词 lung cancer kilovoltage cone-beam computed tomography (kV-CBCT) intensity-modulated radiotherapy (IMRT) stereotactic radiotherapy tumor changes adaptive planning
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Macroscopic on-site magnifier-based evaluation to estimate visible tissue core cut-off lengths using EUS-FNA with 22-gauge needles
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作者 Jialiang Huang Guilian Cheng +3 位作者 Wei Wu liming xu Longjiang xu Duanmin Hu 《Chinese Medical Journal》 SCIE CAS CSCD 2024年第4期493-495,共3页
To the Editor:Endoscopic ultrasound-guided fine needle aspiration(EUS-FNA)has replaced other high-risk invasive methods and has become the primary method of tissue collection around the gastrointestinal tract.^([1])To... To the Editor:Endoscopic ultrasound-guided fine needle aspiration(EUS-FNA)has replaced other high-risk invasive methods and has become the primary method of tissue collection around the gastrointestinal tract.^([1])To further improve the effectiveness and safety of EUS-FNA,pathologists may perform rapid on-site cytology evaluation(ROSE),but this process requires the presence of pathologists.Macroscopic on-site evaluation(MOSE)has gained attention as it resolve the shortage of pathologist resources.^([2])Endoscopists can inspect the tissue core in real time and assess the adequacy of the punctured material.In this study,we conducted a single-center and single-arm exploratory study to explore the value of MOSE in assessing specimen quality during magnifier-based EUS-FNA and to confirm the cut-off length of visible tissue core(VTC)for EUS-FNA to help endosonographers independently predict the adequacy of punctured specimens.The VTC was defined as a white or incarnadine tissue core obtained from focal lesions with a relatively complete histological structure. 展开更多
关键词 EUS needle VISIBLE
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Dek35 Encodes a PPR Protein that Affects cis-Splicing of Mitochondrial nad4 Intron 1 and Seed Development in Maize 被引量:27
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作者 Xinze Chen Fan Feng +4 位作者 Weiwei Qi liming xu Dongsheng Yao Qun Wang Rentao Song 《Molecular Plant》 SCIE CAS CSCD 2017年第3期427-441,共15页
In higher plants, the splicing of organelle-encoded mRNA involves a complex collaboration with nuclear- encoded proteins. Pentatricopeptide repeat (PPR) proteins have been implicated in these RNA-protein interaction... In higher plants, the splicing of organelle-encoded mRNA involves a complex collaboration with nuclear- encoded proteins. Pentatricopeptide repeat (PPR) proteins have been implicated in these RNA-protein interactions. In this study, we performed the cloning and functional characterization of maize Defective kernel 35 (Dek35). The dek35-ref mutant is a lethal-seed mutant with developmental deficiency. Dek35 was cloned through Mutator tag isolation and further confirmed by four additional independent mutant alleles. Dek35 encodes an P-type PPR protein that targets the mitochondria. The dek35 mutation causes significant reduction in the accumulation of DEK35 proteins and reduced splicing efficiency of mitochon- drial nad4 intron 1. Analysis of mitochondrial complex in dek35 immature seeds indicated severe deficiency in the complex I assembly and NADH dehydrogenase activity. Transcriptome analysis of dek35 endosperm revealed enhanced expression of genes involved in the alternative respiratory pathway and extensive differentially expressed genes related to mitochondrial function and activity. Collectively, these results indicate that Dek35 encodes an PPR protein that affects the cis-splicing of mitochondrial nad4 intron 1 and is required for mitochondrial function and seed development. 展开更多
关键词 PPR SPLICING mitochondria NADH MAIZE
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Magnetic resonance imaging for non-invasive clinical evaluation of normal and regenerated cartilage 被引量:7
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作者 Xian xu Jingming Gao +11 位作者 Shuyun Liu Liang Chen Min Chen Xiaoye Yu Ning Ma Jun Zhang Xiaobin Chen Lisen Zhong Lin Yu liming xu Quanyi Guo Jiandong Ding 《Regenerative Biomaterials》 SCIE 2021年第5期50-62,共13页
With the development of tissue engineering and regenerative medicine,it is much desired to establish bioimaging techniques to monitor the real-time regeneration efficacy in vivo in a non-invasive way.Herein,we tried m... With the development of tissue engineering and regenerative medicine,it is much desired to establish bioimaging techniques to monitor the real-time regeneration efficacy in vivo in a non-invasive way.Herein,we tried magnetic resonance imaging(MRI)to evaluate knee cartilage regeneration after implanting a biomaterial scaffold seeded with chondrocytes,namely,matrix-induced autologous chondrocyte implantation(MACI).After summary of the T2 mapping and the T1-related delayed gadolinium-enhanced MRI imaging of cartilage(dGEMRIC)in vitro and in vivo in the literature,these two MRI techniques were tried clinically.In this study,18 patients were followed up for 1 year.It was found that there was a significant difference between the regeneration site and the neighboring normal site(control),and the difference gradually diminished with regeneration time up to 1 year according to both the quantitative T1 and T2 MRI methods.We further established the correlation between the quantitative evaluation of MRI and the clinical Lysholm scores for the first time.Hence,the MRI technique was confirmed to be a feasible semiquantitative yet non-invasive way to evaluate the in vivo regeneration of knee articular cartilage. 展开更多
关键词 magnetic resonance imaging cartilage regeneration T2 mapping delayed gadolinium-enhanced MRI imaging tissue engineering
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Quantitatively relating magnetic resonance T_(1)and T_(2)to glycosaminoglycan and collagen concentrations mediated by penetrated contrast agents and biomacromolecule-bound water 被引量:1
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作者 Jingming Gao Xian xu +7 位作者 Xiaoye Yu Ye Fu Hongjie Zhang Siyi Gu Dinglingge Cao Quanyi Guo liming xu Jiandong Ding 《Regenerative Biomaterials》 SCIE EI CSCD 2023年第1期871-888,共18页
Magnetic resonance imaging(MRI)is a promising non-invasive method to assess cartilage regeneration based on the quantitative relationship between MRI features and concentrations of the major components in the extracel... Magnetic resonance imaging(MRI)is a promising non-invasive method to assess cartilage regeneration based on the quantitative relationship between MRI features and concentrations of the major components in the extracellular matrix(ECM).To this end,in vitro experiments are performed to investigate the relationship and reveal the underlying mechanism.A series of collagen(COL)and glycosaminoglycan(GAG)solutions at different concentrations are prepared,and T_(1)and T_(2)relaxation times are measured with or without a contrast agent(Gd-DTPA2−)by MRI.Fourier transform infrared spectrometry is also used to measure the contents of biomacromolecule-bound water and other water,allowing theoretical derivation of the relationship between biomacromolecules and the resulting T_(2)values.It has been revealed that the MRI signal in the biomacromolecule aqueous systems is mainly influenced by the protons in hydrogens of biomacromolecule-bound water,which we divide into inner-bound water and outer-bound water.We have also found that COL results in higher sensitivity of bound water than GAG in T_(2)mapping.Owing to the charge effect,GAG regulates the penetration of the contrast agent during dialysis and has a more significant effect on T_(1)values than COL.Considering that COL and GAG are the most abundant biomacromolecules in the cartilage,this study is particularly useful for the real-time MRI-guided assessment of cartilage regeneration.A clinical case is reported as an in vivo demonstration,which is consistent with our in vitro results.The established quantitative relation plays a critical academic role in establishing an international standard ISO/TS24560-1:2022‘Clinical evaluation of regenerative knee articular cartilage using delayed gadolinium-enhanced MRI of cartilage(dGEMRIC)and T_(2)mapping’drafted by us and approved by International Standard Organization. 展开更多
关键词 magnetic resonance imaging COLLAGEN GLYCOSAMINOGLYCAN bound water CARTILAGE
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Immune risk assessment of residual αGal in xenogeneic decellularized cornea using GTKO mice 被引量:1
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作者 Liang Chen Lina Wei +1 位作者 Anliang Shao liming xu 《Regenerative Biomaterials》 SCIE 2020年第4期427-434,共8页
The xenogeneic decellularized corneal matrix(DCM)was expected to be used in lamellar keratoplasty in clinic as the substitute of allogeneic cornea.After decellularization treatment,the remaining risk of xenograft reje... The xenogeneic decellularized corneal matrix(DCM)was expected to be used in lamellar keratoplasty in clinic as the substitute of allogeneic cornea.After decellularization treatment,the remaining risk of xenograft rejection needed to be assessed.The galactose-α1,3-galactose,as the most abundant and closely rejection-related xenogeneic antigen,should be one of the important factors concerned in immunological evaluation.In this study,residual αGal in the DCM was first determined by an enzyme-linked immunosorbent assay method with qualified accuracy and specificity.Then the DCM was implanted subcutaneously into the α1,3-galactosyltransferase gene-knockout(GTKO)mice,accompanied by the implantation in the wild-type C57BL/6 mice as a comparison.The total serum antibody levels,anti-Gal antibody levels,inflammatory cytokines and ratios of splenic lymphocyte subtypes were detected and the histopathological analysis of implants were performed to systematically evaluate the immune responses.The experimental result showed the fresh porcine corneal matrix samples had(9.90±1.54)×10^12 αGal epitope per mg while the content of residual aGal in the DCM was(7.90±2.00)×10^12 epitope per mg.The GTKO mice had similar potential of reaction to immune stimulation to that of wild-type C57BL/6 mice.At 4 weeks after implantation of DCM,in WT mice and GTKO mice there were both innate immunity response to the DCM characterized by macrophage infiltration.But the elevations of anti-Gal IgG level and the percentage of splenic natural killer cells were only detected in GTKO mice.These changes were thought to be pertinent to the residual αGal antigen,which could not be detected in WT mice.No further αGal antibody-mediated cellular immunity and significant changes of serum cytokine contents were found in GTKO mice,which perhaps suggested that the immune reactions to the DCM after 4 weeks of implantation were moderate and had minor effect on the survival of the corneal graft. 展开更多
关键词 decellularized corneal matrix immune risk galactose-α1 3-galactose(aGal) GTKO mice
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ADGAN:Adaptive Domain Medical Image Synthesis Based on Generative Adversarial Networks
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作者 liming xu Yanrong Lei +2 位作者 Bochuan Zheng Jiancheng Lv Weisheng Li 《CAAI Artificial Intelligence Research》 2024年第1期114-125,共12页
Multimodal medical imaging of human pathological tissues provides comprehensive information to assist in clinical diagnosis.However,due to the high cost of imaging,physiological incompatibility,and the harmfulness of ... Multimodal medical imaging of human pathological tissues provides comprehensive information to assist in clinical diagnosis.However,due to the high cost of imaging,physiological incompatibility,and the harmfulness of radioactive tracers,multimodal medical image data remains scarce.Currently,cross-modal medical synthesis methods can generate desired modal images from existing modal images.However,most existing methods are limited to specific domains.This paper proposes an Adaptive Domain Medical Image Synthesis Method based on Generative Adversarial Networks(ADGAN)to address this issue.ADGAN achieves multidirectional medical image synthesis and ensures pathological consistency by constructing a single generator to learn the latent shared representation of multiple domains.The generator employs dense connections in shallow layers to preserve edge details and incorporates auxiliary information in deep layers to retain pathological features.Additionally,spectral normalization is introduced into the discriminator to control discriminative performance and indirectly enhance the image synthesis ability of the generator.Theoretically,it can be proved that the proposed method can be trained quickly,and spectral normalization contributes to adaptive and multidirectional synthesis.In practice,comparing with recent state-of-the-art methods,ADGAN achieves average increments of 4.7%SSIM,6.7%MSIM,7.3%PSNR,and 9.2%VIF. 展开更多
关键词 generative adversarial networks multimodal medical images adaptive domain latent shared representation
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