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一种水稻叶片基因组DNA简易提取方法
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作者 金素奎 国倩倩 +1 位作者 刘巧泉 高继平 《生物技术通报》 北大核心 2025年第1期74-84,共11页
【目的】为了应对日益增加的大规模遗传材料鉴定需求,急需建立一种快速、简易、高效、低成本的基因组DNA提取方法。【方法】根据水稻遗传鉴定的特点,对传统TPS法进行改进和简化。(1)将特制的钢珠加样条与全自动研磨仪结合使用,提高了研... 【目的】为了应对日益增加的大规模遗传材料鉴定需求,急需建立一种快速、简易、高效、低成本的基因组DNA提取方法。【方法】根据水稻遗传鉴定的特点,对传统TPS法进行改进和简化。(1)将特制的钢珠加样条与全自动研磨仪结合使用,提高了研磨水稻叶片组织的速度;(2)使用TPS缓冲液室温研磨裂解,无需液氮冷冻研磨;(3)研磨后的组织匀浆仅需75℃水浴20 min即可完成裂解;(4)室温静置5 min后吸取粗提液上清5μL至96孔PCR板内,使用排枪加入95μL灭菌的去离子水进行稀释,即完成基因组DNA的提取过程。【结果】简易TPS法提取基因组DNA的步骤减少至6步以内,省略了DNA沉淀、离心、洗涤、溶解等过程。提取过程简单、快速,可在30 min内完成96个样本的DNA提取。提取过程中使用的试剂种类较少且廉价易得、安全环保。通过优化DNA提取液的用量,用简易TPS法提取的基因组DNA开展的各类常规分子遗传鉴定的效果与CTAB法及传统TPS法相当。【结论】简易TPS法提高了水稻基因组DNA提取的效率,适合高通量的遗传鉴定。 展开更多
关键词 水稻叶片 基因组DNA CTAB法 传统TPS法 简易TPS法
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籼稻背景下导入Wxin等位基因改良稻米食味和理化品质 被引量:8
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作者 杨勇 陆彦 +6 位作者 郭淑青 石仲慧 赵杰 范晓磊 李钱峰 刘巧泉 张昌泉 《作物学报》 CAS CSCD 北大核心 2019年第11期1628-1637,共10页
水稻Wx^b等位基因已广泛用于籼稻的品质改良,但携带该等位基因的一些籼稻米饭往往偏软,仍需进一步改良。为明确籼稻背景下导入Wxin等位基因对稻米食味品质和理化品质的效应,分别以携带Wx^in的IR64和携带Wx^b的9311为供体,以携带Wx^a的籼... 水稻Wx^b等位基因已广泛用于籼稻的品质改良,但携带该等位基因的一些籼稻米饭往往偏软,仍需进一步改良。为明确籼稻背景下导入Wxin等位基因对稻米食味品质和理化品质的效应,分别以携带Wx^in的IR64和携带Wx^b的9311为供体,以携带Wx^a的籼稻SIR3611(3611)为受体,基于分子标记辅助选择,通过杂交和连续回交的方式构建了3611背景下携带Wx^in和Wx^b的近等基因系。系统比较了不同近等基因系间的农艺性状以及稻米的食味和理化品质。结果表明,近等基因系与受体亲本3611的主要农艺性状基本接近,无显著差异。NIL(Wx^in)稻米的表观直链淀粉含量较亲本3611极显著下降而胶稠度极显著增加。NIL(Wx^b)稻米表观直链淀粉含量最低且与之对应的胶稠度最高。近等基因系NIL(Wx^in)和NIL(Wx^b)稻米的食味值较亲本极显著提高。NIL(Wx^in)和NIL(Wx^b)稻米的GBSSI丰度与对应的表观直链淀粉含量具有明显的正相关。稻米粉的黏滞性谱、热糊化特性和晶体结构与直链淀粉含量显著相关性。本研究为在我国籼稻品种品质改良中有效利用Wx^in等位基因提供了重要依据。 展开更多
关键词 水稻 食味品质 Wx等位基因 表观直链淀粉含量 分子标记辅助选择
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水稻黑条矮缩病抗性QTL定位
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作者 刘江宁 王楚鑫 +5 位作者 张宏根 缪一栩 高海林 许作鹏 刘巧泉 汤述翥 《作物学报》 CAS CSCD 北大核心 2019年第11期1664-1671,共8页
发掘水稻黑条矮缩病的抗性基因有助于抗病品种的选育,减少黑条矮缩病对水稻生产的危害。本研究构建了包含222个家系的L5494/IR36重组自交系群体。对该群体进行黑条矮缩病的田间诱发鉴定,抗性亲本IR36发病率为28.70%,感病亲本L5494发病率... 发掘水稻黑条矮缩病的抗性基因有助于抗病品种的选育,减少黑条矮缩病对水稻生产的危害。本研究构建了包含222个家系的L5494/IR36重组自交系群体。对该群体进行黑条矮缩病的田间诱发鉴定,抗性亲本IR36发病率为28.70%,感病亲本L5494发病率为84.26%,群体发病率范围为11.21%~89.81%。利用134对分子标记构建覆盖12条染色体的遗传连锁图谱,总遗传距离为1475.97cM,平均标记间距为11.1cM。利用QTL IciMapping 4.0对抗黑条矮缩病QTL进行分析,共检测到4个QTL,其中第1、第2、第9染色体上QTL的表型贡献率分别为12.64%、16.00%和8.43%,抗病等位基因来自抗病亲本IR36;第6染色体上QTL的表型贡献率为10.82%,抗病等位基因来自感病亲本L5494。在此基础上,利用93-11为供体、日本晴为背景的近等基因系材料,在qRBSDV-1定位区间内检测到来自93-11的抗性QTL。本研究结果为水稻黑条矮缩病抗性基因定位及分子标记辅助选择育种提供借鉴。 展开更多
关键词 水稻黑条矮缩病 重组自交系 QTL定位
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Determination of Amylose Content and Its Relationship with RVA Profile Within Genetically Similar Cultivars of Rice(Oryza sativa L.ssp.japonica) 被引量:10
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作者 WANG Xin-qi YIN Lin-qing +2 位作者 SHEN Ge-zhi XU Li liu qiao-quan 《Agricultural Sciences in China》 CAS CSCD 2010年第8期1101-1107,共7页
Anther culture pure lines with antisense Wx gene were generated by Agrobacterium tumefaciens-mediated co-transformation followed by anther culture in transgenic rice (Oryza sativa L. ssp. japonica). The antisense Wx... Anther culture pure lines with antisense Wx gene were generated by Agrobacterium tumefaciens-mediated co-transformation followed by anther culture in transgenic rice (Oryza sativa L. ssp. japonica). The antisense Wx transgenic pure lines were used to analyze the differences and the relationship between RVA eigenvalues among the lines with different amylose contents. 77 pure lines of anther culture having antisense Wx gene were studied for the amylose content of its offspring cultivar, Wuyunjing 7. It was found that levels ofamylose content were similar to the control in 19 lines (16.0%); 1-5% lower than control in 50 lines, of which, within 11.0-13.9% in 40 lines; and 3.1-4.0% in 8 lines. The effect of the amylose content on RVA eigenvalue was analyzed through the RVA profile graphic comparison and test of significance for RVA eigenvalues. The analysis of RVA profiles with different amylose contents indicated that there were two kinds of RVA profiles within genetically similar cultivars. The lines with 3.1-4.0% of amylose content were distinctly different from other lines and conventional glutinous rice. The comparison of the similarity curve of RVA profile of the lines with different amylose contents showed that the lines with lower amylose content had a distinguished RVA profile with the curve increasing gradually, but not exceeding the first apex. The test of significance for eigenvalues of the RVA profile in the lines with different amylose contents indicated that there were five eigenvalues remarkably different among the lines with 3.1-4.0% of amylose content compared with other two groups. Further, there were three eigenvalues remarkably different among the lines with 11.0-13.5% of amylose content compared with control group. An optimized mathematical model, which characterizes the relationships between the amylose content and RVA eigenvalue, has been established in this study. From this model, it was clearly indicated that the parameters PeT and SBV were more related to amylose content. It was concluded that the differences in amylose content not only affected the eigenvalues of RVA but also caused different RVA profiles within genetically similar cultivars. The introduction of antisense Wx gene could lead to reduce the amylose content and lay theoretical foundation for quality improvement in rice breeding programs. 展开更多
关键词 antisense Wx gene amylose content RVA profile RICE
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Breeding of Selectable Marker-Free Transgenic Rice Lines Containing AP1 Gene with Enhanced Disease Resistance 被引量:3
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作者 YU Heng-xiu liu qiao-quan +6 位作者 WANG Ling ZHAO Zhi-peng XU Li HUANG Ben-li GONG Zhi-yun TANG Shu-zhu GU Ming-hong 《Agricultural Sciences in China》 CAS CSCD 2006年第11期805-811,共7页
In order to obtain marker-free transgenic rice with improved disease resistance, the AP1 gene of Capsicum annuum and hygromycin-resistance gene (HPT) were cloned into the two separate T-DNA regions of the binary vec... In order to obtain marker-free transgenic rice with improved disease resistance, the AP1 gene of Capsicum annuum and hygromycin-resistance gene (HPT) were cloned into the two separate T-DNA regions of the binary vector pSB130, respectively, and introduced into the calli derived from the immature seeds of two elite japonica rice varieties, Guangling Xiangjing and Wuxiangjing 9, mediated by Agrobacterium-mediated transformation. Many cotransgenic rice lines containing both the AP1 gene and the marker gene were regenerated and the integration of both transgenes in the transgenic rice plants was confirmed by either PCR or Southern blotting technique. Several selectable marker-free transgenic rice plants were subsequently obtained from the progeny of the cotransformants, and confirmed by both PCR and Southern blotting analysis. These transgenic rice lines were tested in the field and their resistance to disease was carefully investigated, the results showed that after inoculation the resistance to either bacterial blight or sheath blight of the selected transgenic lines was improved when compared with those of wild type. 展开更多
关键词 rice (Oryza sativa L.) disease resistance AP1 gene selectable marker-free bacterial blight sheath blight
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Unintended Changes in Genetically Modified Rice Expressing the Lysine-Rich Fusion Protein Gene Revealed by a Proteomics Approach 被引量:2
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作者 ZHAO Xiang-xiang TANG Tang +4 位作者 liu Fu-xia LU Chang-li HU Xiao-lan JI Li-lian liu qiao-quan 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2013年第11期2013-2021,共9页
Development of new technologies for evaluating genetically modiifed (GM) crops has revealed that there are unintended insertions and expression changes in GM crops. Proifling techniques are non-targeted approaches a... Development of new technologies for evaluating genetically modiifed (GM) crops has revealed that there are unintended insertions and expression changes in GM crops. Proifling techniques are non-targeted approaches and are capable of detecting more unintended changes in GM crops. Here, we report the application of a comparative proteomic approach to investigate the protein proifle differences between a GM rice line, which has a lysine-rich protein gene, and its non-transgenic parental line. Proteome analysis by two-dimensional gel electrophoresis (2-DE) and mass spectrum analysis of the seeds identiifed 22 differentially expressed protein spots. Apart from a number of glutelins that were detected as targeted proteins in the GM line, the majority of the other changed proteins were involved in carbohydrate metabolism, protein synthesis and stress responses. These results indicated that the altered proteins were not associated with plant allergens or toxicity. 展开更多
关键词 transgenic rice PROTEOME profiling techniques unintended changes two-dimensional gel electrophoresis
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QTL Mapping for Rice RVA Properties Using High-Throughput Re-sequenced Chromosome Segment Substitution Lines 被引量:2
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作者 ZHANG Chang-quan HU Bing +5 位作者 ZHU Kong-zhi ZHANG Hua LENG Ya-lin TANG Shu-zhu GU Ming-hong liu qiao-quan 《Rice science》 SCIE 2013年第6期407-414,共8页
The rapid visco analyser (RVA) profile is an important factor for evaluation of the cooking and eating quality of rice. To improve rice quality, the identification of new quantitative trait loci (QTLs) for RVA pro... The rapid visco analyser (RVA) profile is an important factor for evaluation of the cooking and eating quality of rice. To improve rice quality, the identification of new quantitative trait loci (QTLs) for RVA profiling is of great significance. We used a japonica rice cultivar Nipponbare as the recipient and indica rice 9311 as the donor to develop a population containing 38 chromosome segment substitution lines (CSSLs) genotyped by a high-throughput re-sequencing strategy. In this study, the population and the parent lines, which contained similar apparent amylose contents, were used to map the QTLs of RVA properties including peak paste viscosity (PKV), hot paste viscosity (HPV), cool paste viscosity (CPV), breakdown viscosity (BKV), setback viscosity (SBV), consistency viscosity (CSV), peak time (PET) and pasting temperature (PAT). QTL analysis was carried out using one-way analysis of variance and Dunnett's test, and stable QTLs were identified over two years and under two environments. We identified 10 stable QTLs: qPKV2-1, qSBV2-1; qPKV5-1, qHPV5-1, qCPV5-1; qPKV7-1, qHPV7-1, qCPV7-1, qSBV7-1; and qPKV8-1 on chromosomes 2, 5, 7 and 8, respectively, with contributions ranging from -95.6% to 47.1%. Besides, there was pleiotropy in the QTLs on chromosomes 2, 5 and 7. 展开更多
关键词 RICE chromosome segment substitution line rapid visco analyzer profile quantitative traitlocus substitution mapping
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Transgenic Expression of the Recombinant Phytase in Rice (Oryza sativa) 被引量:2
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作者 liu qiao-quan LI Qian-feng +4 位作者 JIANG Li ZHANG Da-jiang WANG Hong-mei Gu Ming-hong YAO Quan-hong 《Rice science》 SCIE 2006年第2期79-84,共6页
In most of the cereal crop, phytic acid is the main storage form of phosphorus, which can decrease the bioavailability of phosphate. Transgenic expression of phytase is regarded as an efficient way to release phosphat... In most of the cereal crop, phytic acid is the main storage form of phosphorus, which can decrease the bioavailability of phosphate. Transgenic expression of phytase is regarded as an efficient way to release phosphate from phytate in transgenic plants. In this study, a plant expression vector, containing the recombinant phytase gene driven by the maize ubiquitin (Ubi) promoter was constructed and introduced into an elite rice variety via Agrobacterium-mediated transformation. During the experiment, a total of 15 independent transgenic rice lines were regenerated. The results of PCR and Southern blot indicated that the target gene was integrated into the genome of transgenic rice plants. Moreover, the RT-PCR analysis of total RNAs extracted from the immature seeds of several transgenic lines showed that the recombinant phytase gene could be normally expressed. The inorganic phosphorus content, both in the mature seeds and the leaf was significantly higher in the transgenic plants than in the untransformed wild type. 展开更多
关键词 transgenic rice recombinant phytase inorganic phosphorus content nutritional quality
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Differential expressions among five Waxy alleles and their effects on the eating and cooking qualities in specialty rice cultivars 被引量:7
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作者 ZHOU Li-jie SHENG Wen-tao +3 位作者 WU Jun ZHANG Chang-quan liu qiao-quan DENG Qi-yun 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2015年第6期1153-1162,共10页
Eating and cooking qualities(ECQs) of rice are important attributes due to its major influence on consumer acceptability. To better understand the molecular mechanism of the variation in ECQs, we investigated and co... Eating and cooking qualities(ECQs) of rice are important attributes due to its major influence on consumer acceptability. To better understand the molecular mechanism of the variation in ECQs, we investigated and compared the expressions among different alleles of the Waxy(Wx) gene and its effect on ECQs in specialty rice cultivars. The results showed that the accumulation of amylose was positively and significantly correlated to the level of mature Wx m RNA and granule-bound starch synthase I(GBSS I) in developing rice grain at 12 days after flowering. The amount of GBSS I and its activity together are the main factors controlling amylose synthesis. Differences in ECQs among five Wx allele types were investigated in samples from 15 rice varieties. The apparent amylose content(AAC) and gel consistency(GC) were similar in each type of Wx allele. The AAC followed the order, Wx^a type〉Wx^in type〉Wx^b type〉Wx^mq type〉wx. Contrary to this, the GC showed an opposite trend compared to AAC. There was a wide variation in rapid visco analyzer(RVA) profile among five Wx allele types, while varieties sharing a specified Wx allele had basically the similar RVA profile, although there was a slight difference in some RVA parameters, peak, hot paste and cool paste viscosities. 展开更多
关键词 alleles cooking eating qualities GBSS starch specialty flowering mature paste
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A genetic diversity assessment of starch quality traits in rice landraces from the Taihu basin,China 被引量:5
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作者 AO Yan XU Yong +4 位作者 CUI Xiao-fen WANG An TENG Fei SHEN Li-qun liu qiao-quan 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2016年第3期493-501,共9页
There are nearly 1 000 rice landrace varieties in the Taihu basin, China. To assess the genetic diversity of the rice, 24 intragenic molecular markers(representing 17 starch synthesis-related genes) were investigate... There are nearly 1 000 rice landrace varieties in the Taihu basin, China. To assess the genetic diversity of the rice, 24 intragenic molecular markers(representing 17 starch synthesis-related genes) were investigated in 115 Taihu basin rice landraces and 87 improved cultivars simultaneously. The results show that the average genetic diversity and polymorphism information content values of the landraces were higher than those of improved cultivars. In total, 41 and 39 allele combinations(of the 17 genes) were derived from the landraces and improved cultivars, respectively; only two identical allele combinations were found bet ween the two rice variety sources. Cluster analysis, based on the molecular markers, revealed that the rice varieties could be subdivided into five groups and, within these, the japonica improved rice and japonica landrace rice varieties were in two separate groups. According to the quality reference criteria to classify the rice into grades, some of the landraces were found to perform we ll, in terms of starch quality. For example, according to NY /T595-2002 criteria from the Ministry of Agriculture of China, 25 and 33 landraces reached grade 1, in terms of their apparent amylose content and gel consistency. Th e varieties that had outstanding quality could be used as breeding materials for rice quality breeding programs in the future. Our study is useful for future applications, such as genetic diversity studies, the protection of rice variety and improvment of rice quality in breeding programs. 展开更多
关键词 intragenic molecular marker starch synthesis improved cultivars cluster analysis polymorphism information content
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Improving grain appearance of erect-panicle japonica rice cultivars by introgression of the null gs9 allele 被引量:1
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作者 ZHAO Dong-sheng liu Jin-yu +7 位作者 DING Ai-qiu ZHANG Tao REN Xin-yu ZHANG Lin LI Qian-feng FAN Xiao-lei ZHANG Chang-quan liu qiao-quan 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2021年第8期2032-2042,共11页
The panicle architecture and grain size of rice affect not only grain yield but also grain quality,especially grain appearance.The erect-panicle(EP)trait controlled by the qpe9-1/dep1 allele has been widely used in hi... The panicle architecture and grain size of rice affect not only grain yield but also grain quality,especially grain appearance.The erect-panicle(EP)trait controlled by the qpe9-1/dep1 allele has been widely used in high-yielding japonica rice breeding,but usually accompanied with moderate appearance of milled rice.The null gs9 allele shows a good potential for improving grain shape and appearance.However,GS9 and qPE9-1/DEP1 loci are tightly linked,and their interaction is unclear,which obviously restricts their utilization in modern rice breeding.In the present study,comparative analyses of protein and mRNA levels revealed that GS9 and qPE9-1 function independently.Three nearisogenic lines(NILs)carrying various allelic combinations of these two loci,NIL(gs9/qpe9-1),NIL(GS9/qPE9-1)and NIL(gs9/qPE9-1),in the EP japonica cultivar 2661(GS9/qpe9-1)background were developed for genetic interaction analysis.GS9 and qPE9-1 had additive effects on determining grain size,and the null gs9 allele could decrease grain chalkiness and improve grain appearance without affecting plant and panicle architecture in EP japonica cultivars.Additionally,introgression lines(ILs)developed in another released EP japonica cultivar Wuyujing 27(WYJ27)background showed the same additive effect and the feasibility of utilizing the gs9 allele to improve grain appearance quality in high-yielding EP cultivars.This study provides an effective strategy for rice breeders to improve rice grain appearance in EP japonica and related cultivars. 展开更多
关键词 rice GS9 qPE9-1/DEP1 genetic interaction erect panicle grain appearance
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Fine Mapping and Cloning of Leafy Head Mutant Gene pla1-5 in Rice
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作者 FENG Gong-neng ZHANG Chang-quan +4 位作者 ZHAO Dong-sheng ZHU Kong-zhi TU Huai-zhou XU Chen-wu liu qiao-quan 《Rice science》 SCIE 2013年第5期329-335,共7页
We identified a leafy head mutant plal-5 (plastochron 1-5) from the progeny of japonica rice cultivar Taipei 309 treated with 60Co-γ ray irradiation. The plal-5 mutant has a dwarf phenotype and small leaves. Compar... We identified a leafy head mutant plal-5 (plastochron 1-5) from the progeny of japonica rice cultivar Taipei 309 treated with 60Co-γ ray irradiation. The plal-5 mutant has a dwarf phenotype and small leaves. Compared with its wild type, plal-5 has more leaves and fewer tillers, and it fails to produce normal panicles at the maturity stage. Genetic analysis showed that the plal-5 phenotype is controlled by a single recessive nuclear gene. Using the map-based cloning strategy, we narrowed down the location of the target gene to a 58-kb region between simple sequence repeat markers CHR1027 and CHR1030 on the long arm of chromosome 10. The target gene cosegregated with molecular markers CHR1028 and CHR1029. There were five predicted genes in the mapped region. The results from sequencing analysis revealed that there was one base deletion in the first exon of LOC_Os10g26340 encoding cytochrome P450 CYP78A11 in the plal-5 mutant, which might result in a downstream frame shift and premature termination. These results suggest that the P450 CYP78A11 gene is the candidate gene of PLA1-5. 展开更多
关键词 Oryza sativa leafy head mutant genetic analysis gene cloning P450 CYP78A11 gene
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高产优质杂交粳稻新组合陵风优6号的选育
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作者 张宏根 孙铭琰 +8 位作者 许作鹏 梁国华 严长杰 刘巧泉 于恒秀 龚志云 裔传灯 汤述翥 顾铭洪 《杂交水稻》 CSCD 北大核心 2022年第5期83-85,共3页
陵风优6号是扬州大学利用不育系陵风A与恢复系YR6配组育成的强优势杂交粳稻新组合。该组合具有生长繁茂、产量高、米质优、综合抗性较好等特点,2020年通过国家农作物品种审定委员会审定。
关键词 杂交粳稻 陵风优6号 优质 高产 选育
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