Background:Fat deposition is an important economic consideration in pig production.The amount of fat deposition in pigs seriously affects production efficiency,quality,and reproductive performance,while also affecting...Background:Fat deposition is an important economic consideration in pig production.The amount of fat deposition in pigs seriously affects production efficiency,quality,and reproductive performance,while also affecting consumers’choice of pork.Weighted gene co-expression network analysis(WGCNA)is effective in pig genetic studies.Therefore,this study aimed to identify modules that co-express genes associated with fat deposition in pigs(Songliao black and Landrace breeds)with extreme levels of backfat(high and low)and to identify the core genes in each of these modules.Results:We used RNA sequences generated in different pig tissues to construct a gene expression matrix consisting of 12,862 genes from 36 samples.Eleven co-expression modules were identified using WGCNA and the number of genes in these modules ranged from 39 to 3,363.Four co-expression modules were significantly correlated with backfat thickness.A total of 16 genes(RAD9A,IGF2R,SCAP,TCAP,SMYD1,PFKM,DGAT1,GPS2,IGF1,MAPK8,FABP,FABP5,LEPR,UCP3,APOF,and FASN)were associated with fat deposition.Conclusions:RAD9A,TCAP,SMYD1,PFKM,GPS2,and APOF were the key genes in the four modules based on the degree of gene connectivity.Combining these results with those from differential gene analysis,SMYD1 and PFKM were proposed as strong candidate genes for body size traits.This study explored the key genes that regulate porcine fat deposition and lays the foundation for further research into the molecular regulatory mechanisms underlying porcine fat deposition.展开更多
In order to explore a new mulch-free maize planting mode and the best seedling age for maize transplantation in Shanxi early mature area,a field experiment was carried out using completely randomized block design. Tak...In order to explore a new mulch-free maize planting mode and the best seedling age for maize transplantation in Shanxi early mature area,a field experiment was carried out using completely randomized block design. Taking mulch based direct sowing as the control group,effects of transplantation in different seedling age on maize growing process,plant height,yield and composition factors of maize were analyzed.Results indicate that growing process of maize seedlings transplanted in different seedling age is slightly slower than the control group. Transplantation has the effect of reducing plant height. Although the yield of transplanted maize in different seedling age is lower than the control group. Besides,with the growth of seedling age of transplantation,the gap is widening. However,it is expected to realize mulch-free maize planting by transplantation in Shanxi early mature area. The yield of maize transplanted in two-leaf seedling age is not significantly different from the control group,and the yield is only 9% lower than the mulch-based direct sowing( CK). In conclusion,two-leaf period is the best seedling transplantation age for maize in Shanxi early mature area in this experiment condition.展开更多
In order to explore a new mulch-free maize planting mode and the best seedling age for maize transplantation in Shanxi early mature area,a field experiment was carried out using completely randomized block design.Taki...In order to explore a new mulch-free maize planting mode and the best seedling age for maize transplantation in Shanxi early mature area,a field experiment was carried out using completely randomized block design.Taking mulch-based direct sowing as the control group,effects of transplantation in different stage on maize growing process,plant height,three-ear leaf area in mature period,and yield and composition factors of maize were studied.Results indicate that growing process of maize seedlings transplanted in every stage is slightly slower than the control group.Transplantation has effect of reducing plant height and three-ear leaf area in mature period.There was no significant difference between the yield of maize transplanted on May 1st and the control group,and the yield declined only by 7% compared with mulch-based direct sowing(CK).Damages to maize seedlings by the local late frost must be noticed when maize is planted by the method of mulch-free transplantation in early mature area.Transplanting the seedlings earlier after the late frost is deemed as an appropriate period in this area.展开更多
Background:N6-methyladenosine(m6A)RNA modification has been demonstrated to be a significant regulatory process in the progression of various tumors,including breast cancer.Fat mass and obesity-associated(FTO)enzyme,i...Background:N6-methyladenosine(m6A)RNA modification has been demonstrated to be a significant regulatory process in the progression of various tumors,including breast cancer.Fat mass and obesity-associated(FTO)enzyme,initially known as the obesity-related protein,is the first identified m6A demethylase.However,the relationship between FTO and breast cancer remains controversial.In this study,we aimed to elucidate the role and clinical significance of FTO in breast cancer and to explore the underlying mechanism.Methods:We first investigated the expression of FTO in breast cancer cell lines and tissues by quantitative reverse transcription-PCR(qRT-PCR),Western blotting,and immunohistochemistry.Wound healing assay and Transwell assay were performed to determine the migration and invasion abilities of SKBR3 and MDAMB453 cells with either knockdown or overexpression of FTO.RNA sequencing(RNA-seq)was conducted to decipher the downstream targets of FTO.qRT-PCR,luciferase reporter assay,and Western blotting were employed to confirm the existence of the FTO/miR-181b-3p/ARL5B axis.The biological function of ADP ribosylation factor like GTPase 5B(ARL5B)in breast cancer cells was evaluated by wound healing assay and Transwell invasion assay.Results:High FTO expression was observed in human epidermal growth factor receptor 2(HER2)-positive breast cancer,predicting advanced progression(tumor size[P<0.001],nuclear grade[P=0.001],peritumoral lymphovascular invasion[P<0.001),lymph node metastasis[P=0.002],and TNM stage[P=0.001])and poor prognosis.Moreover,FTO promoted cell invasion and migration in vitro.Mechanistically,RNA-seq and further confirmation studies suggested that FTO up-regulated ARL5B by inhibiting miR-181b-3p.We further verified that ARL5B also displayed carcinogenic activity in breast cancer cells.Conclusion:Our work demonstrated the carcinogenic activity of FTO in promoting the invasion and migration of breast cancer cells via the FTO/miR-181b-3p/ARL5B signaling pathway.展开更多
Combining ecological niche modeling with phylogeography has become a popular approach to understand how historical climate changes have created and maintained population structure. However, methodological choices in g...Combining ecological niche modeling with phylogeography has become a popular approach to understand how historical climate changes have created and maintained population structure. However, methodological choices in geographic extents and environmental layer sets employed in modeling may affect results and interpretations profoundly. Here, we infer range-wide phylogeographic structure and model ecological niches of Cyanoderrna ruficeps, and compare results to previous studies that examined this species across China's Mainland and Taiwan only. Use of dense taxon sampling of closely related species as outgroups question C. ruficeps monophyly. Furthermore, previously unsampled C. ruficeps populations from central Vietnam were closely related to disjunct western populations （Nepal, Tibet, Myanmar, Yunnan）, rather than to geographically proximate populations in northern Vietnam and eastern China. Phylogeographic structure is more complex than previously appreciated; niche model projections to Last Glacial Maximum climate scenarios identified larger areas of suitable conditions than previous studies, but potential distributional limits differed markedly between climate models employed and were dependent upon interpretation of non-analogous historical climate scenarios. Previously identified population expansion across central China may result from colonization from refugial distributions during the Last Interglacial, rather than the Last Glacial Maximum, as previously understood [Current Zoology 61 （5）： 901-909, 2015].展开更多
基金financially supported by the National Key Research and Development Project(2019YFE0106800)the National Key R&D Program of China(2018YFD0501000)+2 种基金Beijing Municipal Education Commission Science and Technology Program General Project(KM201910020010)Beijing Innovation Consortium of Agriculture Research System(BAIC02-2021)the China Agriculture Research System(CARS-35).
文摘Background:Fat deposition is an important economic consideration in pig production.The amount of fat deposition in pigs seriously affects production efficiency,quality,and reproductive performance,while also affecting consumers’choice of pork.Weighted gene co-expression network analysis(WGCNA)is effective in pig genetic studies.Therefore,this study aimed to identify modules that co-express genes associated with fat deposition in pigs(Songliao black and Landrace breeds)with extreme levels of backfat(high and low)and to identify the core genes in each of these modules.Results:We used RNA sequences generated in different pig tissues to construct a gene expression matrix consisting of 12,862 genes from 36 samples.Eleven co-expression modules were identified using WGCNA and the number of genes in these modules ranged from 39 to 3,363.Four co-expression modules were significantly correlated with backfat thickness.A total of 16 genes(RAD9A,IGF2R,SCAP,TCAP,SMYD1,PFKM,DGAT1,GPS2,IGF1,MAPK8,FABP,FABP5,LEPR,UCP3,APOF,and FASN)were associated with fat deposition.Conclusions:RAD9A,TCAP,SMYD1,PFKM,GPS2,and APOF were the key genes in the four modules based on the degree of gene connectivity.Combining these results with those from differential gene analysis,SMYD1 and PFKM were proposed as strong candidate genes for body size traits.This study explored the key genes that regulate porcine fat deposition and lays the foundation for further research into the molecular regulatory mechanisms underlying porcine fat deposition.
基金Supported by Doctorate research foundation of Shanxi Academy of Agricultural Sciences(YBSJJ1303)
文摘In order to explore a new mulch-free maize planting mode and the best seedling age for maize transplantation in Shanxi early mature area,a field experiment was carried out using completely randomized block design. Taking mulch based direct sowing as the control group,effects of transplantation in different seedling age on maize growing process,plant height,yield and composition factors of maize were analyzed.Results indicate that growing process of maize seedlings transplanted in different seedling age is slightly slower than the control group. Transplantation has the effect of reducing plant height. Although the yield of transplanted maize in different seedling age is lower than the control group. Besides,with the growth of seedling age of transplantation,the gap is widening. However,it is expected to realize mulch-free maize planting by transplantation in Shanxi early mature area. The yield of maize transplanted in two-leaf seedling age is not significantly different from the control group,and the yield is only 9% lower than the mulch-based direct sowing( CK). In conclusion,two-leaf period is the best seedling transplantation age for maize in Shanxi early mature area in this experiment condition.
基金Supported by Doctorate Research Foundation of Shanxi Academy of Agricultural Sciences(YBSJJ1303)
文摘In order to explore a new mulch-free maize planting mode and the best seedling age for maize transplantation in Shanxi early mature area,a field experiment was carried out using completely randomized block design.Taking mulch-based direct sowing as the control group,effects of transplantation in different stage on maize growing process,plant height,three-ear leaf area in mature period,and yield and composition factors of maize were studied.Results indicate that growing process of maize seedlings transplanted in every stage is slightly slower than the control group.Transplantation has effect of reducing plant height and three-ear leaf area in mature period.There was no significant difference between the yield of maize transplanted on May 1st and the control group,and the yield declined only by 7% compared with mulch-based direct sowing(CK).Damages to maize seedlings by the local late frost must be noticed when maize is planted by the method of mulch-free transplantation in early mature area.Transplanting the seedlings earlier after the late frost is deemed as an appropriate period in this area.
文摘Background:N6-methyladenosine(m6A)RNA modification has been demonstrated to be a significant regulatory process in the progression of various tumors,including breast cancer.Fat mass and obesity-associated(FTO)enzyme,initially known as the obesity-related protein,is the first identified m6A demethylase.However,the relationship between FTO and breast cancer remains controversial.In this study,we aimed to elucidate the role and clinical significance of FTO in breast cancer and to explore the underlying mechanism.Methods:We first investigated the expression of FTO in breast cancer cell lines and tissues by quantitative reverse transcription-PCR(qRT-PCR),Western blotting,and immunohistochemistry.Wound healing assay and Transwell assay were performed to determine the migration and invasion abilities of SKBR3 and MDAMB453 cells with either knockdown or overexpression of FTO.RNA sequencing(RNA-seq)was conducted to decipher the downstream targets of FTO.qRT-PCR,luciferase reporter assay,and Western blotting were employed to confirm the existence of the FTO/miR-181b-3p/ARL5B axis.The biological function of ADP ribosylation factor like GTPase 5B(ARL5B)in breast cancer cells was evaluated by wound healing assay and Transwell invasion assay.Results:High FTO expression was observed in human epidermal growth factor receptor 2(HER2)-positive breast cancer,predicting advanced progression(tumor size[P<0.001],nuclear grade[P=0.001],peritumoral lymphovascular invasion[P<0.001),lymph node metastasis[P=0.002],and TNM stage[P=0.001])and poor prognosis.Moreover,FTO promoted cell invasion and migration in vitro.Mechanistically,RNA-seq and further confirmation studies suggested that FTO up-regulated ARL5B by inhibiting miR-181b-3p.We further verified that ARL5B also displayed carcinogenic activity in breast cancer cells.Conclusion:Our work demonstrated the carcinogenic activity of FTO in promoting the invasion and migration of breast cancer cells via the FTO/miR-181b-3p/ARL5B signaling pathway.
基金We thank Nikki Boggess, who assisted in labwork. Fieldwork in Vietnam was facilitated by Dr. Le Mahn Hung, and supported by the National Geographic Committee for Research and Exploration. Fieldwork in China was supported by the National Science Foundation （DEB-0344430 to ATP）. The laboratory portions of this work were supported by the National Science Foundation （DEB-0743576 to RGM）. We thank recordists who shared their Stachyris/Cyanoderma recordings on Xeno-canto.
文摘Combining ecological niche modeling with phylogeography has become a popular approach to understand how historical climate changes have created and maintained population structure. However, methodological choices in geographic extents and environmental layer sets employed in modeling may affect results and interpretations profoundly. Here, we infer range-wide phylogeographic structure and model ecological niches of Cyanoderrna ruficeps, and compare results to previous studies that examined this species across China's Mainland and Taiwan only. Use of dense taxon sampling of closely related species as outgroups question C. ruficeps monophyly. Furthermore, previously unsampled C. ruficeps populations from central Vietnam were closely related to disjunct western populations （Nepal, Tibet, Myanmar, Yunnan）, rather than to geographically proximate populations in northern Vietnam and eastern China. Phylogeographic structure is more complex than previously appreciated; niche model projections to Last Glacial Maximum climate scenarios identified larger areas of suitable conditions than previous studies, but potential distributional limits differed markedly between climate models employed and were dependent upon interpretation of non-analogous historical climate scenarios. Previously identified population expansion across central China may result from colonization from refugial distributions during the Last Interglacial, rather than the Last Glacial Maximum, as previously understood [Current Zoology 61 （5）： 901-909, 2015].
