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Dual Self-attention Fusion Message Neural Network for Virtual Screening in Drug Discovery by Molecular Property Prediction
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作者 Jingjing Wang Kangming Hou +2 位作者 Hao Chen Jing Fang hongzhen li 《Journal of Bionic Engineering》 2025年第1期354-369,共16页
The development of deep learning has made non-biochemical methods for molecular property prediction screening a reality,which can increase the experimental speed and reduce the experimental cost of relevant experiment... The development of deep learning has made non-biochemical methods for molecular property prediction screening a reality,which can increase the experimental speed and reduce the experimental cost of relevant experiments.There are currently two main approaches to representing molecules:(a)representing molecules by fixing molecular descriptors,and(b)representing molecules by graph convolutional neural networks.Currently,both of these Representative methods have achieved some results in their respective experiments.Based on past efforts,we propose a Dual Self-attention Fusion Message Neural Network(DSFMNN).DSFMNN uses a combination of dual self-attention mechanism and graph convolutional neural network.Advantages of DSFMNN:(1)The dual self-attention mechanism focuses not only on the relationship between individual subunits in a molecule but also on the relationship between the atoms and chemical bonds contained in each subunit.(2)On the directed molecular graph,a message delivery approach centered on directed molecular bonds is used.We test the performance of the model on eight publicly available datasets and compare the performance with several models.Based on the current experimental results,DSFMNN has superior performance compared to previous models on the datasets applied in this paper. 展开更多
关键词 Directed message passing network Deep learning Molecular property prediction Self-attention mechanism
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Interface design enabled manufacture of giant metallic glasses 被引量:5
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作者 hongzhen li Zhen li +6 位作者 Jian Yang Hai Bo Ke Baoan Sun Chen Chen Yuan Jiang Ma Jun Shen Wei-Hua Wang 《Science China Materials》 SCIE EI CAS CSCD 2021年第4期964-972,共9页
Developing materials with excellent properties has been the untiring pursuit of mankind.Metallic glasses(MGs)would be the ideal metallic materials if their size could be scaled up to be comparable to traditional metal... Developing materials with excellent properties has been the untiring pursuit of mankind.Metallic glasses(MGs)would be the ideal metallic materials if their size could be scaled up to be comparable to traditional metals.To address this challenge,a variety of approaches have been attempted over the past decades,including thermodynamicsbased alloy,3D printing and the recent artificial intelligenceguided optimal alloy.In this study,a facile and flexible route was demonstrated to manufacture giant MGs(GMGs)with diameters more than 100 mm through the thermo-joining process.The jointed GMG samples feature almost the same performance as the as-cast ones.The ability of manufacturing complex 3D components such as the Chinese Zodiacs was also demonstrated.Our approach might overcome the longstanding problem of glass forming ability(GFA)limitations in alloy systems and pave new concept and route to fabricate size unlimited MGs. 展开更多
关键词 giant metallic glass glass forming ability thermo-manufacture interface design
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Ultra-fast amorphization of crystalline alloys by ultrasonic vibrations 被引量:3
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作者 Luyao li Guo-Jian Lyu +10 位作者 hongzhen li Caitao Fan Wenxin Wen Hongji lin Bo Huang Sajad Sohrabi Shuai Ren Xiong liang Yun-Jiang Wang Jiang Ma Weihua Wang 《Journal of Materials Science & Technology》 SCIE EI CAS CSCD 2023年第11期76-88,共13页
The amorphization of alloys is of both broad scientific interests and engineering significance.Despite considered as an efficient strategy to regulate and even achieve record-breaking properties of metallic materials,... The amorphization of alloys is of both broad scientific interests and engineering significance.Despite considered as an efficient strategy to regulate and even achieve record-breaking properties of metallic materials,a facile and rapid method to trigger solid-state amorphization is still being pursued.Here we report such a method to utilize ultrasonic vibration to trigger amorphization of intermetallic compound.The ultrasonic vibrations can cause tunable amorphization at room temperature and low stress(2 MPa)conveniently.Remarkably,the ultrasonic-induced amorphization could be achieved in 60 s,which is 360 times faster than the ball milling(2.16×10^(4) s)with the similar proportion of amorphization.The elements redistribute uniformly and rapidly via the activated short-circuit diffusion.Both experimental evidences and simulations show that the amorphous phase initiates and expands at nanograin boundaries,owing to the induction of lattice instability.This work provides a groundbreaking strategy for developing novel materials with tunable structures and properties. 展开更多
关键词 Amorphization Ultrasonic vibration Lattice instability Elemental diffusion
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Guidelines for the diagnosis and treatment of pancreatic cancer in China (2021) 被引量:1
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作者 Yinmo Yang Xueli Bai +48 位作者 Dapeng Bian Shouwang Cai Rufu Chen Feng Cao Menghua Dai Chihua Fang Deliang Fu Chunlin Ge Xiaochao Guo Chunyi Hao Jihui Hao Heguang Huang Zhixiang Jian Gang Jin Fei li Haimin li Shengping li Weiqin li Yixiong li hongzhen li Tingbo liang Xubao liu Wenhui Lou Yi Miao Yiping Mou Chenghong Peng Renyi Qin Chenghao Shao Bei Sun Guang Tan Xiaodong Tian Huaizhi Wang Lei Wang Wei Wang Weilin Wang Junmin Wei Heshui Wu Wenming Wu Zheng Wu Jingyong Xu Changqing Yan Xiaoyu Yin Xianjun Yu Chunhui Yuan Taiping Zhang Jixin Zhang Jun Zhou Yupei Zhao on behalf of the Chinese Pancreatic Surgery Association 《Journal of Pancreatology》 2021年第2期49-66,共18页
The incidence of pancreatic cancer has been rising worldwide,and its clinical diagnosis and treatment remain a great challenge.To present the update and improvements in the clinical diagnosis and treatment of pancreat... The incidence of pancreatic cancer has been rising worldwide,and its clinical diagnosis and treatment remain a great challenge.To present the update and improvements in the clinical diagnosis and treatment of pancreatic cancer in recent years,Chinese Pancreatic Association,the Chinese Society of Surgery,Chinese Medical Association revised the Guidelines for the Diagnosis and Treatment of Pancreatic Cancer in China(2014)after reviewing evidence-based and problem-oriented literature published during 2015-2021,mainly focusing on highlight issues regarding diagnosis and surgical treatment of pancreatic cancer,conversion strategies for locally advanced pancreatic cancer,treatment of pancreatic cancer with oligo metastasis,adjuvant and neoadjuvant therapy,standardized processing of surgical specimens and evaluation of surgical margin status,systemic treatment for unresectable pancreatic cancer,genetic testing,as well as postoperative follow up of patients with pancreatic cancer.Forty recommendation items were finally proposed based on the above issues,and the quality of evidence and strength of recommendations were graded using the Grades of Recommendation,Assessment,Development,and Evaluation system.This guideline aims to standardize the clinical diagnosis and therapy,especially surgical treatment of pancreatic cancer in China,and further improve the prognosis of patients with pancreatic cancer. 展开更多
关键词 DIAGNOSIS GUIDELINE Multidisciplinary team Pancreatic cancer TREATMENT
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Nano-amorphous–crystalline dual-phase design of Al_(80)Li_(5)Mg_(5)Zn_(5)Cu_(5)multicomponent alloy
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作者 hongzhen li Chao Yang +3 位作者 Jianan Fu Weisi Cai Yuqiang Yan Jiang Ma 《Science China Materials》 SCIE EI CAS CSCD 2022年第6期1671-1678,共8页
The design of metallic materials with high strength,high ductility,and high thermal stability has always been a long-sought goal for the materials science community.However,the trade-off between strength and ductility... The design of metallic materials with high strength,high ductility,and high thermal stability has always been a long-sought goal for the materials science community.However,the trade-off between strength and ductility remains a challenge.Here,we proposed a new strategy to design and fabricate bulk amorphous-crystalline dual-phase superior alloys out of the Al_(80)Li_(5)Mg_(5)Zn_(5)Cu_(5)multicomponent alloy.The nano-amorphous phase revealed unexpected thermal stability during fabrication and mechanical testing above the crystallization temperature.The true fracture strength of the Al_(80)Li_(5)Mg_(5)Zn_(5)Cu_(5)nano-amorphous-crystal dual-phase multicomponent alloy was increased from 528 to 657 MPa,and the true strain was increased from 18%to 48%.In addition,the alloy yielded a strength 1.5 times higher than that of the commonly used high-strength aluminum alloys at 250℃.This strategy provided a new approach and concept for the design of high-performance alloys to ensure strength-plasticity balance. 展开更多
关键词 amorphous alloys nanocrystalline alloys multicomponent alloy high-performance alloys
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Neoadjuvent androgen deprivation for seminal vesicle reduction:The optimal portion of seminal vesicle included in the high-dose CTV in localized prostate cancer radiotherapy
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作者 Xin Qi Xianshu Gao +7 位作者 Xiaomei li Shangbin Qin Xiaoying li Mingwei Ma Yun Bai Jiayan Chen Xueying Ren hongzhen li 《Radiation Medicine and Protection》 CSCD 2023年第1期43-47,共5页
Objective:To clarify the length and volume reduction of seminal vesicles(SVs)after neo-adjuvant hormonal therapy(NHT),in order to help contour the optimal SV included into high-dose clinical target volume(CTV)for radi... Objective:To clarify the length and volume reduction of seminal vesicles(SVs)after neo-adjuvant hormonal therapy(NHT),in order to help contour the optimal SV included into high-dose clinical target volume(CTV)for radiotherapy in intermediate-and high-risk patients.Methods:MR images both before and after NHT(5.3±2.2 months)were collected from thirty-one patients with cT2-4N0M0 prostate cancer.SV volume was measured in axial T1WI,while SV length was obtained in a reconstructed oblique coronary plane through its long axial from a 3D sequence.Results:SVs showed evident reduction both in length and volume(length:median 12.1%,range 4.0%–28.0%;volume:median 39.9%,range 9.4%–66.2%).For SVs with and without MR detected involvement,length shortening were(16.7±4.8)%and(11.1±4.4)%(P<0.001);for involved SVs and lesions,volume reduction were(41.0±16.0)%and(66.3±14.4)%,respectively(P<0.001),both indicating a more sensitive response to NHT of the involved portion than normal SV.Conclusions:Both volume and length of the SV will be reduced after receiving NHT.Besides,the invaded segments shrink more than normal SV tissue,indicating that SV portion included within the CTV can be reduced. 展开更多
关键词 Prostate cancer Seminal vesicles Target volume delineation Neo-adjuvant hormonal therapy
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巨块型NSCLC质子部分立体定向消融推量放疗的剂量学优势
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作者 白赟 高献书 +15 位作者 马茗微 赵智磊 刘沛霖 曹汐 秦尚彬 刘思伟 高研 任雪盈 李洪振 张敏 李晓梅 吕峰 李晓颖 亓昕 陈佳琰 谢木 《中华放射肿瘤学杂志》 CSCD 北大核心 2022年第8期710-715,共6页
目的探索肿瘤长径>8 cm的巨块非小细胞肺癌(NSCLC)放疗中质子部分立体定向消融推量放疗(P-SABR)的剂量学优势。方法收集既往应用光子P-SABR治疗的9例巨块NSCLC的定位影像。在光子肿瘤推量靶区(光子GTVb)基础上逐步外扩,直到重要危及... 目的探索肿瘤长径>8 cm的巨块非小细胞肺癌(NSCLC)放疗中质子部分立体定向消融推量放疗(P-SABR)的剂量学优势。方法收集既往应用光子P-SABR治疗的9例巨块NSCLC的定位影像。在光子肿瘤推量靶区(光子GTVb)基础上逐步外扩,直到重要危及器官受量达3.0 Gy/次时停止,形成质子肿瘤推量靶区(质子GTVb),质子GTV、CTV范围同光子,分别制订光子固定野调强放疗(光子FF-IMRT)、光子容积调强弧形治疗(光子VMAT)、质子调强放疗(IMPT)计划。对比不同治疗技术的剂量学参数。结果光子GTVb和质子GTVb占GTV体积比分别为25.4%±13.4%和69.7%±30.0%(P<0.001)。光子IMRT、光子VMAT、IMPT的CTV平均剂量分别为(76.1±4.9)Gy、(78.2±3.6)Gy、(84.7±4.9)Gy,生物有效剂量(BED)≥90 Gy所包含肿瘤占GTV体积的百分比分别为70.7%±21.7%、76.8%±22.1%、97.9%±4.0%,质子较光子P-SABR计划显著提高了靶区剂量及BED(P<0.05)。质子较光子计划还降低了危及器官受量,其中光子FF-IMRT、光子VMAT和IMPT的双肺V5 Gy分别为49.2%±22.0%、56.8%±19.0%和16.1%±6.3%(P<0.001)。结论质子P-SABR较光子可在降低危及器官受量情况下,扩大肿瘤推量靶区范围并提高肿瘤内BED,有望进一步提高巨块NSCLC的局部控制率。 展开更多
关键词 放射疗法 质子 立体定向消融放射疗法 非小细胞肺 巨块肿瘤
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Highly pathogenic coronavirus N protein aggravates inflammation by MASP-2-mediated lectin complement pathway overactivation 被引量:5
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作者 Ting Gao lin Zhu +29 位作者 Hainan liu Xiaopeng Zhang Tingting Wang Yangbo Fu hongzhen li Qincai Dong Yong Hu Zhang Zhang Jing Jin Zijing liu Weihong Yang Yaoning liu Yanwen Jin Kaitong li Yongjiu Xiao Junli liu Huailong Zhao Yue liu Ping li Jibo Song Lu Zhang Yuwei Gao Sisi Kang Shoudeng Chen Qingjun Ma Xiuwu Bian Wei Chen Xuan liu Qing Mao Cheng Cao 《Signal Transduction and Targeted Therapy》 SCIE CSCD 2022年第10期3940-3954,共15页
Excessive inflammatory responses contribute to the pathogenesis and lethality of highly pathogenic human coronaviruses,but the underlying mechanism remains unclear.In this study,the N proteins of highly pathogenic hum... Excessive inflammatory responses contribute to the pathogenesis and lethality of highly pathogenic human coronaviruses,but the underlying mechanism remains unclear.In this study,the N proteins of highly pathogenic human coronaviruses,including severe acute respiratory syndrome coronavirus(SARS-CoV),middle east respiratory syndrome coronavirus(MERS-CoV)and severe acute respiratory syndrome coronavirus 2(SARS-CoV-2),were found to bind MASP-2,a key serine protease in the lectin pathway of complement activation,resulting in excessive complement activation by potentiating MBL-dependent MASP-2 activation,and the deposition of MASP-2,C4b,activated C3 and C5b-9.Aggravated inflammatory lung injury was observed in mice infected with adenovirus expressing the N protein.Complement hyperactivation was also observed in SARS-CoV-2-infected patients.Either blocking the N protein:MASP-2 interaction,MASP-2 depletion or suppressing complement activation can significantly alleviate N protein-induced complement hyperactivation and lung injury in vitro and in vivo.Altogether,these data suggested that complement suppression may represent a novel therapeutic approach for pneumonia induced by these highly pathogenic coronaviruses. 展开更多
关键词 LUNG INFLAMMATION activation
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