The additions of straw and biochar have been suggested to increase soil fertility, carbon sequestration, and crop produc- tivity of agricultural lands. To our knowledge, there is little information on the effects of s...The additions of straw and biochar have been suggested to increase soil fertility, carbon sequestration, and crop produc- tivity of agricultural lands. To our knowledge, there is little information on the effects of straw and biochar addition on soil nitrogen form, carbon storage, and super rice yield in cold waterlogged paddy soils. We performed field trials with four treatments including conventional fertilization system （CK）, straw amendment 6 t ha^-1 （S）, biochar amendment 2 t ha^-1 （C1）, and biochar amendment 40 t ha^-1 （C2）. The super japonica rice variety, Shennong 265, was selected as the test Crop. The results showed that the straw and biochar amendments improved total nitrogen and organic carbon content of the soil, reduced N2O emissions, and had little influence on nitrogen retention, nitrogen density, and CO2 emissions. The S and C1 increased NH4^＋-N content, and C2 increased NO3^--N content. Both S and C1 had little influence on soil organic carbon density （SOCD） and C/N ratio. However, C2 greatly increased SOCD and C/N ratio. C1 and C2 significantly improved the soil carbon sequestration （SCS） by 62.9 and 214.0% （P〈0.05）, respectively, while S had no influence on SCS. C1 and C2 maintained the stability of super rice yield, and significantly reduced CH4 emissions, global warming potential （GWP）, and greenhouse gas intensity （GHGI）, whereas S had the opposite and negative effects. In summary, the biochar amendments in cold waterlogged paddy soils of North China increased soil nitrogen and carbon content, improved soil carbon sequestration, and reduced GHG emission without affecting the yield of super rice.展开更多
Super rice breeding in China has been very successful over the past 3 decades, and the Chinese government has made great efforts to support breeding and cultivation of both conventional and hybrid super rice. In this ...Super rice breeding in China has been very successful over the past 3 decades, and the Chinese government has made great efforts to support breeding and cultivation of both conventional and hybrid super rice. In this review, we focus on the progress in and potential of super rice breeding. After the establishment of the breeding theory and strategy of ＂generating an ideotype with strong heterosis through inter-subspecies hybridization, by using gene pyramiding to combine elite traits through composite-crossing to breed super rice varieties with both ideotype and strong hybrid vigor＂, a series of major breakthroughs have been achieved in both conventional and super hybrid rice breeding. A number of new genetic materials with ideotype have been created successfully, and the Ministry of Agriculture of China has approved 156 novel super rice varieties and combinations for commercialization. During the Developing the Super Rice Varieties Program, great attention has also been paid to the integration and demonstration of the rice production technology. Collaboration between industry and university researchers has led to technological innovations and initiation of a demonstration system for super hybrid rice. With widespread cultivation of super rice with higher quality and yield, as well as resistance or tolerance to abiotic or biotic stresses, the yield of rice production per unit has reached a new level. In addition to increased quality and yield, hybrid rice breeding has also led to improvements in many other agronomic traits, such as resistance to pests and diseases, resistance to lodging, and optimized light distribution in population. Achievements in super rice breeding and innovation in rice production have made major contributions to the progress in rice sciences and worldwide food security.展开更多
Rice （Oryza sativa L.） is originated from Asia and more than 90% of rice is produced inAsia. As the most important cereal crop in the world, rice is the staple food for over 1/3 global population, while this proport...Rice （Oryza sativa L.） is originated from Asia and more than 90% of rice is produced inAsia. As the most important cereal crop in the world, rice is the staple food for over 1/3 global population, while this proportion is over 60% in Asia （Wan 2010）. In order to maintain the most important role that rice has played in Asian agriculture and ensure food security in the world, especially in Asia,展开更多
Biochar has been shown to influence soil microbial communities in terms of their abundance and diversity.However,the relationship among microbial abundance,structure and C metabolic traits is not well studied under bi...Biochar has been shown to influence soil microbial communities in terms of their abundance and diversity.However,the relationship among microbial abundance,structure and C metabolic traits is not well studied under biochar application.Here it was hypothesized that the addition of biochar with intrinsic properties（i.e.,porous structure）could affect the proliferation of culturable microbes and the genetic structure of soil bacterial communities.In the meantime,the presence of available organic carbon in biochar may influence the C utilization capacities of microbial community in Biolog Eco-plates.A pot experiment was conducted with differenct biochar application（BC）rates：control（0 t ha^-1）,BC1（20 t ha^-1）and BC2（40 t ha^-1）.Culturable microorganisms were enumerated via the plate counting method.Bacterial diversity was examined using denaturing gradient gel electrophoresis（DGGE）.Microbial capacity in using C sources was assessed using Biolog Eco-plates.The addition of biochar stimulated the growth of actinomyces and bacteria,especially the ammonifying bacteria and azotobacteria,but had no significant effect on fungi proliferation.The phylogenetic distribution of the operational taxonomic units could be divided into the following groups with the biochar addition：Firmicutes,Acidobacteria,Gemmatimonadetes,Actinobacteria,Cyanobacteria andα-,β-,γ-andδ-Proteobacteria（average similarity〉95%）.Biochar application had a higher capacity utilization for L-asparagine,Tween 80,D-mannitol,L-serine,γ-hydroxybutyric acid,N-acetyl-D-glucosamine,glycogen,itaconic acid,glycyl-L-glutamic acid,α-ketobutyricacid and putrescine,whereas it had received decreased capacities in using the other 20 carbon sources in Biolog Eco-plates.Redundancy analysis（RDA）revealed that the physico-chemical properties,indices of bacterial diversity,and C metabolic traits were positively correlated with the appearance of novel sequences under BC2 treatment.Our study indicates that the addition of biochar can increase culturable microbial abundance and shift bacterial genetic structure without enhancing their capacities in utilizing C sources in Biolog Eco-plates,which could be associated with the porous structure and nutrients from biochar.展开更多
It is of great importance to solve the threats induced by cadmium pollution on crops. This paper examined the effect of biochar on cadmium accumulation in japonica rice and revealed the mechanism underlying the respon...It is of great importance to solve the threats induced by cadmium pollution on crops. This paper examined the effect of biochar on cadmium accumulation in japonica rice and revealed the mechanism underlying the response of protective enzyme system to cadmium stress. Biochar derived from rice straw was applied at two application rates under three cadmium concentrations. Shennong 265, super japonica rice variety, was selected as the test crop. The results indicated that cadmium content in above-ground biomass of rice increased with increasing soil cadmium concentrations, but the biochar application could suppress the accumulation of cadmium to some extent. Under high concentrations of cadmium, content of free proline and MDA （malondialdehyde） were high, so did the SOD （superoxide dismutase）, POD （peroxidase） and CAT （catalase） activity in the flag leaf of rice. However, the protective enzyme activities remained at low level when biochar was added.展开更多
In agricultural production,temperature and moisture are important factors affecting grain yield and quality.Although moderate drought at the grain-filling stage can effectively alleviate the damage caused by high temp...In agricultural production,temperature and moisture are important factors affecting grain yield and quality.Although moderate drought at the grain-filling stage can effectively alleviate the damage caused by high temperature,the specific regulatory mechanism driving the effect of moderate drought at the high temperature on starch synthesis is still unclear.To explore the effects and mechanisms of high temperature and moderate drought on rice starch synthesis at the grainfilling stage,the activities of enzymes and expression levels of the genes involved in starch synthesis under four different treatments involving high temperature and/or water stress(CK,HT,WS,and HT+WS)were investigated in this study.The starch synthesis of a japonica inbred rice was measured under the four treatments during the grain filling.The results show that the effects of high temperature and moderate drought on grain filling mainly occur in the inferior grains of rice.Through the regulation of enzymes involved in starch synthesis and the expression levels of their main genes,the synthesis of rice starch can be affected.Therefore,the high temperature and moderate drought were antagonistic,and moderate drought can alleviate the damage to grain quality at a high temperature by improving the starch synthesis of inferior grains in japonica rice.This study provides a basis for stress-resistance cultivation and breeding strategies of rice with high temperature tolerance.展开更多
To select highly informative microsatellite markers （SSRs） and establish a useful genetic SSR framework for rice genotyping, 15 rice （Oryza sativa L.） cultivars including six indica varieties and nine japonica var...To select highly informative microsatellite markers （SSRs） and establish a useful genetic SSR framework for rice genotyping, 15 rice （Oryza sativa L.） cultivars including six indica varieties and nine japonica varieties were used to analyze the polymorphism information content （PIC） value of 489 SSR markers. A total of 1 296 alleles were detected by 405 polymorphic markers with an average of 3.2 per locus. The PIC value of each chromosome was ranged from 0.4039 （chromosome 2） to 0.5840 （chromosome 11）. Among the two rice subspecies, indica （0.3685-0.4952） gave a higher PIC value than japonica （0.1326-0.3164） and displayed a higher genetic diversity. Genetic diversity of indica was high on chromosome 12 （0.4952） and low on chromosome 8 （0.3685）, while that for japonica was high on chromosome 11 （0.3164） and low on chromosome 2 （0.1326）. A SSR framework including 141 highly informative markers for genotyping was selected from 199 SSR markers （PIC〉0.50）. Ninety-three SSR markers distributed on 12 chromosomes were found to be related to indica-japonica differentiation. Of these 93 pairs of SSR primers, 17 pairs were considered as core primers （all the japonica varieties have the same specific alleles, while the indica varieties have another specific alleles）, 48 pairs as the second classic primers （all the japonica or indica varieties have the same specific alleles, while the indica or japanica varieties have two or more other specific alleles ） and 28 pairs as the third classic primers （all the japonica and indica varieties have two or more alleles, but the specific alleles are different between japonica and indica）. Thirty-two SSR markers were selected to be highly informative and useful for genetic diversity analysis of japonica varieties. This work provides a lot of useful information of SSR markers for rice breeding programs, especially for genotyping, diversity analysis and genetic mapping.展开更多
The inheritance of stripe disease resistance in a rice restorer line C224 was analyzed using the mixed effect model of major gene plus polygene for quantitative traits.In addition,the resistance was investigated in se...The inheritance of stripe disease resistance in a rice restorer line C224 was analyzed using the mixed effect model of major gene plus polygene for quantitative traits.In addition,the resistance was investigated in seven crosses of C224 with maintainer lines.The results showed that the stripe resistance of C224 was controlled by two major genes with additive-dominance-epistasis effects plus polygenes with additive-dominance effects （E-1 model）.These two genes had additive effects of-12.47% and-24.75%,respectively,showing negative dominance effects.There were significant epistasis and interaction effects between the two major genes.The heritability of the two major genes was 92.12%,while that of polygenes was 2.74%,indicating that the stripe resistance had dominant major gene effect.Of the seven crosses,five displayed high or medium resistance to the stripe disease.展开更多
The response of transcription factor genes to low nitrogen stress was studied to provide molecular basis for improving the absorption and utilization efficiency of nitrogen fertilizer in rice. The agilent rice genome ...The response of transcription factor genes to low nitrogen stress was studied to provide molecular basis for improving the absorption and utilization efficiency of nitrogen fertilizer in rice. The agilent rice genome arrays were used to study the varied expression of transcription factor genes in two rice varieties （SN 196 and Toyonishhiki） with different chlorophyll contents under low nitrogen stress. The results showed that a total of 53 transcription factor genes （35 down-regulated and 18 up-regulated genes at the transcription level） in flag leaves of super-green rice SN196 and 27 transcription factor genes （21 down-regulated and 6 up-regulated genes at the transcription level） in flag leaves of Toyonishiki were affected by low nitrogen stress. Among those nitrogen-responsive genes, 48 transcription factor genes in SN196 and 22 in Toyonishiki were variety-specific. There were overlapped transcription factor genes responded to low nitrogen stress between SN196 and Toyonishiki, with 1 up-regulated and 4 down-regulated at the transcription level. Distributions of low nitrogen responsive genes on chromosomes were different in two rice varieties.展开更多
The world’s population is facing food shortages due to climate change and the competition for arable land between food and energy crops.Many national and international projects to develop"super rice"cultiva...The world’s population is facing food shortages due to climate change and the competition for arable land between food and energy crops.Many national and international projects to develop"super rice"cultivars were established in recent decades to attain a‘third leap forward’in rice production.In order to evaluate the breeding process in northern China,an 11-year tracking survey of japonica rice breeding,which involved a total of 520 rice accessions and 67 test plots,was completed in this study.The results showed that the yields of these accessions had increased stably,which was similar to control check varieties(CKs).The breeding strategy reduced the panicle number and increased the grain number per panicle through an increase of spikelet density(number of grains per centimeter on the panicle).This high spikelet density benefits not only the yield but also the blast resistance and amylose content.At higher latitudes,the preferred rice accessions had slim grain shape and extended growth period.In the middle latitudes among the test plots,the breeders focused on reducing the amylose content to improve the cooking quality of the rice accessions.Yield and blast resistance were the two highest priorities during the breeding selection process.The present study evaluated the breeding process in northern China during the last decade,which may lead to new insights into the future of rice breeding.展开更多
The study was designated to explore the physiological mechanism of cold tolerance enhanced by phosphate in rice. An experiment was conducted to investigate the effects of different levels of phosphate fertilizer on co...The study was designated to explore the physiological mechanism of cold tolerance enhanced by phosphate in rice. An experiment was conducted to investigate the effects of different levels of phosphate fertilizer on cold tolerance and its related physiological parameters in rice seedings （chilling-sensitive cv. Changbai 9 and chilling-tolerant cv. Jijing 81） under low temperature stress. At the same time, the identification of cold tolerance was conducted. Compared with the normal temperature treatment, the relative chlorophyll content, photosynthesis rate, Fv/Fm and qP decreased and index of unsaturated fatty acid increased in rice under low temperature stress. The effect of chilling-sensitive cultivars was more than that of chilling-tolerant cultivars, more phosphorus fertilizer properly improved seedling quality of rice, slowed relative chlorophyll content dropping degree of rice seeding, increased photosynthesis rate, Fv/Fm, qP and index of unsaturated fatty acids, and enhanced the ability to chilling-tolerant cultivars under low temperature. The effect on chilling-tolerant cultivars was significantly higher than that on chilling sensitive cultivars by applying more phosphorus fertilizer. Phosphate regulated photosynthetic physiology and membrane fluidity to reduce injury by low temperature, and increasd the cold tolerance capacity of rice.展开更多
Abundant genetic diversity and rational population structure of germplasm benefit crop breeding greatly.To investigate genetic variation among geographically diverse set of japonica germplasm,we analyzed 233 japonica ...Abundant genetic diversity and rational population structure of germplasm benefit crop breeding greatly.To investigate genetic variation among geographically diverse set of japonica germplasm,we analyzed 233 japonica rice cultivars collected from Liaoning,Jilin and Heilongjiang provinces of China,which were released from 1970 to 2011 by using 62 simple sequence repeat（SSR） markers and 8 functional gene tags related to yield.A total of 195 alleles（N_a） were detected with an average of 3.61 per locus,indicating a low level of genetic diversity level among all individuals.The genetic diversity of the cultivars from Jilin Province was the highest among the three geographic distribution zones.Moreover,the genetic diversity was increased slightly with the released period of cultivars from 1970 to 2011.The analysis of molecular variance（AMOVA） revealed that genetic differentiation was more diverse within the populations than that among the populations.The neighbor-joining（NJ） tree indicated that cultivar clusters based on geographic distribution represented three independent groups,among which the cluster of cultivars from Heilongjiang is distinctly different to the cluster of cultivars from Liaoning.For the examined functional genes,two or three allelic variations for each were detected,except for IPA1 and GW2,and most of elite genes had been introgressed in modem japonica rice varieties.These results provide a valuable evaluation for genetic backgrounds of current japonica rice and will be used directly for japonica rice breeding in future.展开更多
基金supported by the Science and Technology Consulting Program of Chinese Academy of Engineering(2015-XY-25)the Key Technologies R&D Program of China during the 12th Five-Year Plan period(2014BAD02B06-02)+2 种基金the Special Fund for Agro-scientific Research in Public Interest of China(201303095)the Basic Research Foundation of Shenyang Science and Technology Program,China(F16-205-1-38)the Program for Changjiang Scholars and Innovative Research Team in University,China(IRT13079)
文摘The additions of straw and biochar have been suggested to increase soil fertility, carbon sequestration, and crop produc- tivity of agricultural lands. To our knowledge, there is little information on the effects of straw and biochar addition on soil nitrogen form, carbon storage, and super rice yield in cold waterlogged paddy soils. We performed field trials with four treatments including conventional fertilization system （CK）, straw amendment 6 t ha^-1 （S）, biochar amendment 2 t ha^-1 （C1）, and biochar amendment 40 t ha^-1 （C2）. The super japonica rice variety, Shennong 265, was selected as the test Crop. The results showed that the straw and biochar amendments improved total nitrogen and organic carbon content of the soil, reduced N2O emissions, and had little influence on nitrogen retention, nitrogen density, and CO2 emissions. The S and C1 increased NH4^＋-N content, and C2 increased NO3^--N content. Both S and C1 had little influence on soil organic carbon density （SOCD） and C/N ratio. However, C2 greatly increased SOCD and C/N ratio. C1 and C2 significantly improved the soil carbon sequestration （SCS） by 62.9 and 214.0% （P〈0.05）, respectively, while S had no influence on SCS. C1 and C2 maintained the stability of super rice yield, and significantly reduced CH4 emissions, global warming potential （GWP）, and greenhouse gas intensity （GHGI）, whereas S had the opposite and negative effects. In summary, the biochar amendments in cold waterlogged paddy soils of North China increased soil nitrogen and carbon content, improved soil carbon sequestration, and reduced GHG emission without affecting the yield of super rice.
基金supported by the National Key Research and Development Program of China(2016YFD0300504)the earmarked fund for China Agriculture Research System(CARS-01-13)the Special Fund for Agro-scientific Research in the Public Interest,China(201603002)
文摘Super rice breeding in China has been very successful over the past 3 decades, and the Chinese government has made great efforts to support breeding and cultivation of both conventional and hybrid super rice. In this review, we focus on the progress in and potential of super rice breeding. After the establishment of the breeding theory and strategy of ＂generating an ideotype with strong heterosis through inter-subspecies hybridization, by using gene pyramiding to combine elite traits through composite-crossing to breed super rice varieties with both ideotype and strong hybrid vigor＂, a series of major breakthroughs have been achieved in both conventional and super hybrid rice breeding. A number of new genetic materials with ideotype have been created successfully, and the Ministry of Agriculture of China has approved 156 novel super rice varieties and combinations for commercialization. During the Developing the Super Rice Varieties Program, great attention has also been paid to the integration and demonstration of the rice production technology. Collaboration between industry and university researchers has led to technological innovations and initiation of a demonstration system for super hybrid rice. With widespread cultivation of super rice with higher quality and yield, as well as resistance or tolerance to abiotic or biotic stresses, the yield of rice production per unit has reached a new level. In addition to increased quality and yield, hybrid rice breeding has also led to improvements in many other agronomic traits, such as resistance to pests and diseases, resistance to lodging, and optimized light distribution in population. Achievements in super rice breeding and innovation in rice production have made major contributions to the progress in rice sciences and worldwide food security.
文摘Rice （Oryza sativa L.） is originated from Asia and more than 90% of rice is produced inAsia. As the most important cereal crop in the world, rice is the staple food for over 1/3 global population, while this proportion is over 60% in Asia （Wan 2010）. In order to maintain the most important role that rice has played in Asian agriculture and ensure food security in the world, especially in Asia,
基金funded by the National Natural Science Foundation of China (41401325 and 31501250)the Key Technologied R&D Program of China during the 12th Five-Year Plan period (2014BAD02B06-02)+1 种基金the Special Fund for Agro-scientific Research in the Public Interest, China (201303095)the Excellent Talent Support Program of Ministry of Liaoning Education, China
文摘Biochar has been shown to influence soil microbial communities in terms of their abundance and diversity.However,the relationship among microbial abundance,structure and C metabolic traits is not well studied under biochar application.Here it was hypothesized that the addition of biochar with intrinsic properties（i.e.,porous structure）could affect the proliferation of culturable microbes and the genetic structure of soil bacterial communities.In the meantime,the presence of available organic carbon in biochar may influence the C utilization capacities of microbial community in Biolog Eco-plates.A pot experiment was conducted with differenct biochar application（BC）rates：control（0 t ha^-1）,BC1（20 t ha^-1）and BC2（40 t ha^-1）.Culturable microorganisms were enumerated via the plate counting method.Bacterial diversity was examined using denaturing gradient gel electrophoresis（DGGE）.Microbial capacity in using C sources was assessed using Biolog Eco-plates.The addition of biochar stimulated the growth of actinomyces and bacteria,especially the ammonifying bacteria and azotobacteria,but had no significant effect on fungi proliferation.The phylogenetic distribution of the operational taxonomic units could be divided into the following groups with the biochar addition：Firmicutes,Acidobacteria,Gemmatimonadetes,Actinobacteria,Cyanobacteria andα-,β-,γ-andδ-Proteobacteria（average similarity〉95%）.Biochar application had a higher capacity utilization for L-asparagine,Tween 80,D-mannitol,L-serine,γ-hydroxybutyric acid,N-acetyl-D-glucosamine,glycogen,itaconic acid,glycyl-L-glutamic acid,α-ketobutyricacid and putrescine,whereas it had received decreased capacities in using the other 20 carbon sources in Biolog Eco-plates.Redundancy analysis（RDA）revealed that the physico-chemical properties,indices of bacterial diversity,and C metabolic traits were positively correlated with the appearance of novel sequences under BC2 treatment.Our study indicates that the addition of biochar can increase culturable microbial abundance and shift bacterial genetic structure without enhancing their capacities in utilizing C sources in Biolog Eco-plates,which could be associated with the porous structure and nutrients from biochar.
基金supported by the National Natural Science Foundation of China (41201317)the Key Technologies R&D Program of China during the 12th Five-Year Plan period (2012BAD14B01)
文摘It is of great importance to solve the threats induced by cadmium pollution on crops. This paper examined the effect of biochar on cadmium accumulation in japonica rice and revealed the mechanism underlying the response of protective enzyme system to cadmium stress. Biochar derived from rice straw was applied at two application rates under three cadmium concentrations. Shennong 265, super japonica rice variety, was selected as the test crop. The results indicated that cadmium content in above-ground biomass of rice increased with increasing soil cadmium concentrations, but the biochar application could suppress the accumulation of cadmium to some extent. Under high concentrations of cadmium, content of free proline and MDA （malondialdehyde） were high, so did the SOD （superoxide dismutase）, POD （peroxidase） and CAT （catalase） activity in the flag leaf of rice. However, the protective enzyme activities remained at low level when biochar was added.
基金supported by the National Natural Science Foundation of China (U1708231 and 31601248)the China Agriculture Research System of MOF and MARA (CARS-01-49)the Liaoning Revitalization Talents Program, China (XLYC1807233)
文摘In agricultural production,temperature and moisture are important factors affecting grain yield and quality.Although moderate drought at the grain-filling stage can effectively alleviate the damage caused by high temperature,the specific regulatory mechanism driving the effect of moderate drought at the high temperature on starch synthesis is still unclear.To explore the effects and mechanisms of high temperature and moderate drought on rice starch synthesis at the grainfilling stage,the activities of enzymes and expression levels of the genes involved in starch synthesis under four different treatments involving high temperature and/or water stress(CK,HT,WS,and HT+WS)were investigated in this study.The starch synthesis of a japonica inbred rice was measured under the four treatments during the grain filling.The results show that the effects of high temperature and moderate drought on grain filling mainly occur in the inferior grains of rice.Through the regulation of enzymes involved in starch synthesis and the expression levels of their main genes,the synthesis of rice starch can be affected.Therefore,the high temperature and moderate drought were antagonistic,and moderate drought can alleviate the damage to grain quality at a high temperature by improving the starch synthesis of inferior grains in japonica rice.This study provides a basis for stress-resistance cultivation and breeding strategies of rice with high temperature tolerance.
基金supported by the National Natural Science Foundation of China (30871468)the National Basic Research Program of China (973 Program,2009CB126007)
文摘To select highly informative microsatellite markers （SSRs） and establish a useful genetic SSR framework for rice genotyping, 15 rice （Oryza sativa L.） cultivars including six indica varieties and nine japonica varieties were used to analyze the polymorphism information content （PIC） value of 489 SSR markers. A total of 1 296 alleles were detected by 405 polymorphic markers with an average of 3.2 per locus. The PIC value of each chromosome was ranged from 0.4039 （chromosome 2） to 0.5840 （chromosome 11）. Among the two rice subspecies, indica （0.3685-0.4952） gave a higher PIC value than japonica （0.1326-0.3164） and displayed a higher genetic diversity. Genetic diversity of indica was high on chromosome 12 （0.4952） and low on chromosome 8 （0.3685）, while that for japonica was high on chromosome 11 （0.3164） and low on chromosome 2 （0.1326）. A SSR framework including 141 highly informative markers for genotyping was selected from 199 SSR markers （PIC〉0.50）. Ninety-three SSR markers distributed on 12 chromosomes were found to be related to indica-japonica differentiation. Of these 93 pairs of SSR primers, 17 pairs were considered as core primers （all the japonica varieties have the same specific alleles, while the indica varieties have another specific alleles）, 48 pairs as the second classic primers （all the japonica or indica varieties have the same specific alleles, while the indica or japanica varieties have two or more other specific alleles ） and 28 pairs as the third classic primers （all the japonica and indica varieties have two or more alleles, but the specific alleles are different between japonica and indica）. Thirty-two SSR markers were selected to be highly informative and useful for genetic diversity analysis of japonica varieties. This work provides a lot of useful information of SSR markers for rice breeding programs, especially for genotyping, diversity analysis and genetic mapping.
基金supported by the Guiding Plans for Natural Sciences Foundation of Liaoning Province,China(Grant No.20092207)the Special Foundation for Young Scientists of Liaoning Rice Research Institute,Shenyang,China(Grant No.DZS-2008-1)
文摘The inheritance of stripe disease resistance in a rice restorer line C224 was analyzed using the mixed effect model of major gene plus polygene for quantitative traits.In addition,the resistance was investigated in seven crosses of C224 with maintainer lines.The results showed that the stripe resistance of C224 was controlled by two major genes with additive-dominance-epistasis effects plus polygenes with additive-dominance effects （E-1 model）.These two genes had additive effects of-12.47% and-24.75%,respectively,showing negative dominance effects.There were significant epistasis and interaction effects between the two major genes.The heritability of the two major genes was 92.12%,while that of polygenes was 2.74%,indicating that the stripe resistance had dominant major gene effect.Of the seven crosses,five displayed high or medium resistance to the stripe disease.
基金supported by the Agricultural Science and Technology Achievement Transformation Fund of Science and Technology Ministry of China(Grant No. 2010GB2B000077)the Special Fund forAgro-scientific Research in the Public Interest of theministry of Agriculture of China (Grant No.201203026)
文摘The response of transcription factor genes to low nitrogen stress was studied to provide molecular basis for improving the absorption and utilization efficiency of nitrogen fertilizer in rice. The agilent rice genome arrays were used to study the varied expression of transcription factor genes in two rice varieties （SN 196 and Toyonishhiki） with different chlorophyll contents under low nitrogen stress. The results showed that a total of 53 transcription factor genes （35 down-regulated and 18 up-regulated genes at the transcription level） in flag leaves of super-green rice SN196 and 27 transcription factor genes （21 down-regulated and 6 up-regulated genes at the transcription level） in flag leaves of Toyonishiki were affected by low nitrogen stress. Among those nitrogen-responsive genes, 48 transcription factor genes in SN196 and 22 in Toyonishiki were variety-specific. There were overlapped transcription factor genes responded to low nitrogen stress between SN196 and Toyonishiki, with 1 up-regulated and 4 down-regulated at the transcription level. Distributions of low nitrogen responsive genes on chromosomes were different in two rice varieties.
基金supported by the National Key R&D Program of China(2017YFD0100506)。
文摘The world’s population is facing food shortages due to climate change and the competition for arable land between food and energy crops.Many national and international projects to develop"super rice"cultivars were established in recent decades to attain a‘third leap forward’in rice production.In order to evaluate the breeding process in northern China,an 11-year tracking survey of japonica rice breeding,which involved a total of 520 rice accessions and 67 test plots,was completed in this study.The results showed that the yields of these accessions had increased stably,which was similar to control check varieties(CKs).The breeding strategy reduced the panicle number and increased the grain number per panicle through an increase of spikelet density(number of grains per centimeter on the panicle).This high spikelet density benefits not only the yield but also the blast resistance and amylose content.At higher latitudes,the preferred rice accessions had slim grain shape and extended growth period.In the middle latitudes among the test plots,the breeders focused on reducing the amylose content to improve the cooking quality of the rice accessions.Yield and blast resistance were the two highest priorities during the breeding selection process.The present study evaluated the breeding process in northern China during the last decade,which may lead to new insights into the future of rice breeding.
基金Supported by the Special Agricultural Project of Agricultural Department (200903003)the Agricultural Modernization Project in the Science and Technology Development Plan of Jilin Province (2009-2010) the High-yield Project of Science and Technology Department (2011BAD16B10)
文摘The study was designated to explore the physiological mechanism of cold tolerance enhanced by phosphate in rice. An experiment was conducted to investigate the effects of different levels of phosphate fertilizer on cold tolerance and its related physiological parameters in rice seedings （chilling-sensitive cv. Changbai 9 and chilling-tolerant cv. Jijing 81） under low temperature stress. At the same time, the identification of cold tolerance was conducted. Compared with the normal temperature treatment, the relative chlorophyll content, photosynthesis rate, Fv/Fm and qP decreased and index of unsaturated fatty acid increased in rice under low temperature stress. The effect of chilling-sensitive cultivars was more than that of chilling-tolerant cultivars, more phosphorus fertilizer properly improved seedling quality of rice, slowed relative chlorophyll content dropping degree of rice seeding, increased photosynthesis rate, Fv/Fm, qP and index of unsaturated fatty acids, and enhanced the ability to chilling-tolerant cultivars under low temperature. The effect on chilling-tolerant cultivars was significantly higher than that on chilling sensitive cultivars by applying more phosphorus fertilizer. Phosphate regulated photosynthetic physiology and membrane fluidity to reduce injury by low temperature, and increasd the cold tolerance capacity of rice.
基金supported by the National Natural Science Foundation of China(31371586)the Program for Liaoning Excellent Talents in University(LNET),China(LJQ2013075)
文摘Abundant genetic diversity and rational population structure of germplasm benefit crop breeding greatly.To investigate genetic variation among geographically diverse set of japonica germplasm,we analyzed 233 japonica rice cultivars collected from Liaoning,Jilin and Heilongjiang provinces of China,which were released from 1970 to 2011 by using 62 simple sequence repeat（SSR） markers and 8 functional gene tags related to yield.A total of 195 alleles（N_a） were detected with an average of 3.61 per locus,indicating a low level of genetic diversity level among all individuals.The genetic diversity of the cultivars from Jilin Province was the highest among the three geographic distribution zones.Moreover,the genetic diversity was increased slightly with the released period of cultivars from 1970 to 2011.The analysis of molecular variance（AMOVA） revealed that genetic differentiation was more diverse within the populations than that among the populations.The neighbor-joining（NJ） tree indicated that cultivar clusters based on geographic distribution represented three independent groups,among which the cluster of cultivars from Heilongjiang is distinctly different to the cluster of cultivars from Liaoning.For the examined functional genes,two or three allelic variations for each were detected,except for IPA1 and GW2,and most of elite genes had been introgressed in modem japonica rice varieties.These results provide a valuable evaluation for genetic backgrounds of current japonica rice and will be used directly for japonica rice breeding in future.
